Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_I16
(403 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 154 2e-38
07_01_0578 + 4295386-4296489,4297394-4297507 153 5e-38
10_02_0199 + 6668902-6669293,6669825-6669882 35 0.021
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 34 0.037
03_05_0366 - 23505755-23506441 31 0.34
11_01_0338 + 2522698-2523213 31 0.45
07_03_1721 - 29023979-29025295 29 1.4
03_02_0538 + 9299639-9300046,9300362-9300509,9300648-9300652,930... 29 1.8
02_04_0457 + 23093020-23093343,23093798-23093806 29 1.8
12_02_0488 + 19587337-19587648,19587739-19587798,19587876-195879... 28 2.4
11_06_0209 + 21282079-21282369,21287029-21287137,21287462-212875... 28 3.2
03_01_0092 - 731069-731434,731569-733080 28 3.2
02_01_0163 + 1135592-1135623,1135718-1135816,1135904-1135960,113... 27 4.2
06_03_0447 + 20878444-20878821 27 5.6
03_02_0769 + 11029923-11030172,11030442-11030569,11030892-110311... 27 5.6
02_01_0362 + 2607097-2607371,2607766-2608612,2608842-2608910,260... 27 5.6
12_02_0828 - 23502276-23503472,23503568-23504002,23504097-235042... 27 7.3
10_06_0151 + 11276554-11276916,11277020-11277403 27 7.3
09_02_0384 - 8294914-8297817 27 7.3
07_01_1064 + 9385330-9385432,9386181-9386236,9386938-9387082,938... 27 7.3
11_06_0120 - 20324794-20325204,20325416-20325545,20326172-203262... 26 9.7
11_06_0095 - 20030237-20031711,20031731-20033057 26 9.7
08_01_0525 + 4564885-4565221,4565337-4565476,4565582-4565677,456... 26 9.7
04_03_1022 - 21778315-21779007 26 9.7
02_02_0648 - 12619468-12619874,12621432-12621512,12621607-126217... 26 9.7
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 154 bits (374), Expect = 2e-38
Identities = 72/107 (67%), Positives = 85/107 (79%), Gaps = 1/107 (0%)
Frame = +2
Query: 83 SVARPLVSVYSEKSEVVA-GASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAG 259
+ ARPLVSV + + ++ A + +P V +APIRPD+V H +S N RQPY VS+ AG
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Query: 260 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK 400
HQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK
Sbjct: 63 HQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTK 109
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 153 bits (371), Expect = 5e-38
Identities = 73/105 (69%), Positives = 85/105 (80%), Gaps = 2/105 (1%)
Frame = +2
Query: 92 RPLVSVYSEKSEVVA--GASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQ 265
RPLVSV + + ++ +SL L VF+AP+RPD+V VH +S N RQPY VS+ AGHQ
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
Query: 266 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK 400
TSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK
Sbjct: 66 TSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTK 110
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 35.1 bits (77), Expect = 0.021
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = +2
Query: 212 MSKNARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 382
+++ A ++E G A+SW TGRA A + R R GG R A N G R
Sbjct: 18 LARAAASSVAANREGGG--GAQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 34.3 bits (75), Expect = 0.037
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -2
Query: 378 PPRHMLPNAPCPDLWVPPP 322
PPRH++P P P WVPPP
Sbjct: 308 PPRHLVPRGPAPP-WVPPP 325
>03_05_0366 - 23505755-23506441
Length = 228
Score = 31.1 bits (67), Expect = 0.34
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 158 FVFKAPIRPDLVNDVHVSMSKNAR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 334
++ AP D +V S + R P C S E + +AES TG A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 335 HRSGQGA 355
+ + + A
Sbjct: 168 NDNDEEA 174
>11_01_0338 + 2522698-2523213
Length = 171
Score = 30.7 bits (66), Expect = 0.45
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -2
Query: 309 IRATARPVPQDSALV**PASLLTQ*GWRAFFDIDTWTSLTRSGLMGALNTNGRGSEA 139
+R+ ARP+P+ +AL P+S A I + + R G+M A G EA
Sbjct: 68 VRSAARPIPETAALTLVPSSSAAAMAKSAPVRIPSEAAAARRGVMWAAQAGGEDGEA 124
>07_03_1721 - 29023979-29025295
Length = 438
Score = 29.1 bits (62), Expect = 1.4
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -2
Query: 402 GLVGANIRPPRHMLPNAPCPDLWVP-PPRTRGIRATARPV 286
G+VG + PP H +P P P P P GI A A PV
Sbjct: 228 GIVGHSGVPPMHPIPCFPGPPFVYPWSPAWNGIPAMAPPV 267
>03_02_0538 +
9299639-9300046,9300362-9300509,9300648-9300652,
9302886-9303290,9303379-9304608
Length = 731
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +2
Query: 140 ASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSK--EAGHQT 268
ASL +P F+ PI DL+ D + + + C+ + EAGH T
Sbjct: 295 ASLIVPDDFRCPISLDLMKDPVIVATGQTYERGCIERWLEAGHDT 339
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +2
Query: 257 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 361
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>12_02_0488 +
19587337-19587648,19587739-19587798,19587876-19587941,
19588017-19588082,19588253-19588345
Length = 198
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 167 KAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAES 280
K ++ D N++ + SK R VSK H SAES
Sbjct: 80 KRKVQMDTENELMTNRSKEVRTKMSVSKACKHSVSAES 117
>11_06_0209 +
21282079-21282369,21287029-21287137,21287462-21287580,
21287722-21287829,21287943-21288062,21288838-21289011,
21289111-21289212
Length = 340
Score = 27.9 bits (59), Expect = 3.2
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 161 VFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRA---VARIPRVRGGG 331
VF PIR D+V+ V +K + ++ +Q GTGRA R P+ RGG
Sbjct: 160 VFDVPIRKDIVHRVGTHSTKTISEVSGTGRKPYNQK-----GTGRARHGTLRGPQFRGGA 214
Query: 332 T 334
T
Sbjct: 215 T 215
>03_01_0092 - 731069-731434,731569-733080
Length = 625
Score = 27.9 bits (59), Expect = 3.2
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -2
Query: 375 PRHMLPNAPCPDLWVPPPRTRGIRATARPVP 283
P H++P P P L P P+++ R P
Sbjct: 267 PHHIMPMTPQPQLQPPQPQSKEANTVVRAAP 297
>02_01_0163 +
1135592-1135623,1135718-1135816,1135904-1135960,
1136053-1136116,1136174-1136392,1138562-1138945
Length = 284
Score = 27.5 bits (58), Expect = 4.2
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 330 PPPRTRGIRATARPVPQDSA 271
PPPRTR + PVP SA
Sbjct: 166 PPPRTRQVNPAPPPVPSPSA 185
>06_03_0447 + 20878444-20878821
Length = 125
Score = 27.1 bits (57), Expect = 5.6
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Frame = -3
Query: 128 PHSSPNTPTLKVGLLTDSFRFISEVIP----PKNTIDGGKDHPPPR 3
P S P P + + R V P P IDGGK PPPR
Sbjct: 7 PPSPPPPPLPREAAIAQWRRGRGRVTPSRCLPSRQIDGGKAPPPPR 52
>03_02_0769 +
11029923-11030172,11030442-11030569,11030892-11031137,
11031302-11031557,11031665-11031888
Length = 367
Score = 27.1 bits (57), Expect = 5.6
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +2
Query: 128 VVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRAVAR 307
VVAG +P FVF + N+ VS+SK P + + GHQ + + GR +
Sbjct: 24 VVAGGGMPATFVFGDSLVDAGNNNYLVSLSKANYPPNGIDFD-GHQPTGR-YTNGRTIVD 81
Query: 308 I 310
I
Sbjct: 82 I 82
>02_01_0362 +
2607097-2607371,2607766-2608612,2608842-2608910,
2609968-2610202,2610454-2610536,2610924-2611046,
2611326-2611379
Length = 561
Score = 27.1 bits (57), Expect = 5.6
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 398 WSARTYVRRGTCYRTHP 348
WS TY R G C+RT P
Sbjct: 323 WSQATYRRDGYCHRTEP 339
>12_02_0828 -
23502276-23503472,23503568-23504002,23504097-23504213,
23505330-23505396,23505685-23505725,23506161-23506237,
23506699-23506945
Length = 726
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 323 GGGTHRSGQGAFGNMCRGGRMFAPTKP 403
GGG +G GA RGG AP +P
Sbjct: 49 GGGGGGAGAGAARRRARGGARAAPARP 75
>10_06_0151 + 11276554-11276916,11277020-11277403
Length = 248
Score = 26.6 bits (56), Expect = 7.3
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = -2
Query: 207 TWTSLTRSGLMGALNTNGRGSEAPATT---SLFSEYTDTKGRATDRLI 73
TWTS+ G G +NG G+ A + + S +E+TDT A DR +
Sbjct: 11 TWTSVPGEGGGGGGRSNGGGTAAESDSRELSFDAEHTDT---ALDRYV 55
>09_02_0384 - 8294914-8297817
Length = 967
Score = 26.6 bits (56), Expect = 7.3
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 98 LVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSK 220
LV +Y S V PLP + + PIR LV +H+++ K
Sbjct: 116 LVDLYDRGSFEVVSVDGPLPSIEEKPIREKLVG-MHLNVMK 155
>07_01_1064 +
9385330-9385432,9386181-9386236,9386938-9387082,
9387126-9387298,9388058-9388129,9388222-9388336,
9388418-9388521,9388604-9388645,9388932-9389144,
9389621-9389689
Length = 363
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +2
Query: 182 PDLVNDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRAVARIP 313
PD++ + H+ + KN R +A +G G VA++P
Sbjct: 63 PDVIQNYHLCVVKNRRLDSDTIAKASQMKIIMQYGVGLEVAQLP 106
>11_06_0120 -
20324794-20325204,20325416-20325545,20326172-20326255,
20326584-20326823,20327418-20327498,20327761-20328113
Length = 432
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 284 PKTRRWFDDRPPC*RSRAGARSS 216
PK R+W + P C SR +RS+
Sbjct: 408 PKKRKWIERSPDCVASRLRSRSN 430
>11_06_0095 - 20030237-20031711,20031731-20033057
Length = 933
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -2
Query: 210 DTWTSLTRSGLMGALNTNGRGSEAPATTSL 121
D W S L GAL +N RGS TT +
Sbjct: 298 DVWAPEAISNLFGALVSNLRGSRVLVTTRI 327
>08_01_0525 +
4564885-4565221,4565337-4565476,4565582-4565677,
4566079-4566146,4566542-4566643,4567492-4567630,
4567758-4567898,4568241-4568297,4568400-4568459,
4568866-4568973,4569834-4569994,4570453-4570531,
4571357-4571490,4571846-4571951,4572244-4572432,
4572595-4572822,4573028-4573183,4573491-4573532,
4573752-4573868,4573945-4574121
Length = 878
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 375 PRHMLPNAPCPDLWVPPPRTRGIRATA 295
P H+LP++P PPPR R++A
Sbjct: 13 PWHVLPSSPSQPPSSPPPRASADRSSA 39
>04_03_1022 - 21778315-21779007
Length = 230
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = -2
Query: 375 PRHMLPNAPCPDLWVPPPRTRGIRATARPVP 283
P H+LP +P P W P T P P
Sbjct: 49 PPHLLPPSPAPQQWYDHPPNYHPPHTPAPAP 79
>02_02_0648 -
12619468-12619874,12621432-12621512,12621607-12621716,
12621896-12622164,12622440-12622567,12622637-12622699,
12623196-12623493
Length = 451
Score = 26.2 bits (55), Expect = 9.7
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 393 GANIRP-PRHMLPNAPCPDLWVPPPRTRGIRATARPVPQDS 274
G NI+ RH + A PDL + T+ RA++R P+ S
Sbjct: 304 GNNIKTLSRHAILGAEAPDLVIATATTKQERASSRGDPRSS 344
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,235,711
Number of Sequences: 37544
Number of extensions: 265352
Number of successful extensions: 1169
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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