Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_I15
         (294 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...    66   1e-12
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...    63   7e-12
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    26   1.0  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    26   1.3  
SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo...    25   3.1  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   3.1  
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   4.0  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    23   7.1  
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    23   9.3  

>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 66.1 bits (154), Expect = 1e-12
 Identities = 37/68 (54%), Positives = 43/68 (63%)
 Frame = +3

Query: 90  KDWYAC*SAXPCSPSRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAERSFRK 269
           KDWY    A      + VG TLVNRT G K A++ LKGR+ EVSLADLQ   D E SFRK
Sbjct: 27  KDWYDI-KAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDEEHSFRK 83

Query: 270 FRLIAEDV 293
            +L  ED+
Sbjct: 84  VKLRVEDI 91


>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 63.3 bits (147), Expect = 7e-12
 Identities = 35/68 (51%), Positives = 43/68 (63%)
 Frame = +3

Query: 90  KDWYAC*SAXPCSPSRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAERSFRK 269
           K+WY    A      + VG TLVNRT G K A++ LKGR+ EVSLADLQ   D E +FRK
Sbjct: 27  KEWYDI-KAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDEEHAFRK 83

Query: 270 FRLIAEDV 293
            +L  ED+
Sbjct: 84  VKLRVEDI 91


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -2

Query: 38  SKGLYFYRPPLV 3
           S+GLYFY PP++
Sbjct: 137 SRGLYFYHPPII 148


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 79  RINNLLLNTLLASFRKAFIFTDRPSC 2
           +I  LLL  L+  FRK+F   D+  C
Sbjct: 189 QIGELLLTRLIVQFRKSFQRNDKSMC 214


>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
           Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = -2

Query: 161 IDKGGAHLSAW*TWTGALTCVPVFTG*KDQQSSS*HPSCLLSKGLYFY 18
           I K  A L+A  T   A+ C P+  G  D QS   H   +  K  Y Y
Sbjct: 181 IPKARASLTAAKTSANAVYCPPMLQGNLDLQSGILHADDMDFKTAYSY 228


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 152 PCQSHPGNKNCI*GSKGACF 211
           PC  H   K C  G  GACF
Sbjct: 347 PCGEHTCKKRCHSGLCGACF 366


>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 180 IASEGLKGRVFEVSLADLQADSDAERSFRKFR 275
           + S    GR  +  +AD   DSD+ERS+R+ R
Sbjct: 351 VGSSSSHGRQQDSYIAD---DSDSERSYRRVR 379


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 261 KTFPHHYQPGDQQGRPQKH 205
           + FP H++PG+    P  H
Sbjct: 195 REFPAHHEPGEHMPPPPMH 213


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 254 FRITISLEISKGDLKNTPL*TLRCNFCSLGAI 159
           ++  I L+ S  +L  TP   + CNFC L A+
Sbjct: 204 YKCVICLD-SPENLSCTPCGHIFCNFCILSAL 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,067,544
Number of Sequences: 5004
Number of extensions: 18634
Number of successful extensions: 40
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)