Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_I15
(294 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 79 6e-16
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 79 8e-16
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 79 8e-16
08_02_0179 - 13904027-13904125,13904177-13904259,13906019-139060... 27 2.6
05_07_0283 - 28937027-28937110,28937211-28937549,28937641-289377... 27 2.6
01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267 27 3.5
05_07_0329 - 29308867-29308932,29309040-29309159,29309245-293093... 26 4.6
03_03_0218 + 15506438-15506533,15508340-15508405,15508515-155104... 26 4.6
07_01_0373 + 2783596-2784933 25 8.0
01_06_0333 + 28528413-28529364,28529504-28529539,28529800-28530872 25 8.0
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 79.0 bits (186), Expect = 6e-16
Identities = 45/68 (66%), Positives = 49/68 (72%)
Frame = +3
Query: 90 KDWYAC*SAXPCSPSRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAERSFRK 269
KDWY A R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D +++RK
Sbjct: 27 KDWYDI-KAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED--QAYRK 83
Query: 270 FRLIAEDV 293
RL AEDV
Sbjct: 84 IRLRAEDV 91
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 78.6 bits (185), Expect = 8e-16
Identities = 44/68 (64%), Positives = 49/68 (72%)
Frame = +3
Query: 90 KDWYAC*SAXPCSPSRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAERSFRK 269
KDWY A R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D +++RK
Sbjct: 27 KDWYDI-KAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED--QAYRK 83
Query: 270 FRLIAEDV 293
RL AEDV
Sbjct: 84 IRLRAEDV 91
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 78.6 bits (185), Expect = 8e-16
Identities = 44/68 (64%), Positives = 49/68 (72%)
Frame = +3
Query: 90 KDWYAC*SAXPCSPSRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAERSFRK 269
KDWY A R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D +++RK
Sbjct: 27 KDWYDI-KAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED--QAYRK 83
Query: 270 FRLIAEDV 293
RL AEDV
Sbjct: 84 VRLRAEDV 91
>08_02_0179 -
13904027-13904125,13904177-13904259,13906019-13906066,
13906215-13906308,13907114-13907184,13910157-13910343,
13910714-13910717,13910847-13910919,13911044-13911088,
13912046-13912442
Length = 366
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +1
Query: 85 PVKTGTHVKAPVHVHQ 132
P TGTHV AP HV Q
Sbjct: 99 PTHTGTHVDAPGHVFQ 114
>05_07_0283 -
28937027-28937110,28937211-28937549,28937641-28937754,
28937843-28937955,28939050-28939087,28939315-28939478,
28939746-28939794,28940986-28941152
Length = 355
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 147 TTLVNRTQGTKIASEGLKGRVFEV 218
TT+VN + K+A EG+KG ++V
Sbjct: 17 TTIVNLAEEAKLAREGVKGPGYQV 40
>01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267
Length = 769
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 255 FPHHYQPGDQQGRPQKHAPLDPQMQFLFPG 166
+P+ P D P++H PLD +Q + G
Sbjct: 386 YPYVSNPEDPNHEPRQHEPLDSDVQVIDEG 415
>05_07_0329 - 29308867-29308932,29309040-29309159,29309245-29309364,
29309566-29310123,29310199-29310258,29310839-29310904,
29310993-29311103,29311167-29311257,29311349-29311449,
29311534-29311641,29311737-29314205
Length = 1289
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 156 VNRTQGTKIASEGLKGRVFEVSLADLQADSDAER 257
+ QG KI+++GL+ + +L L+ D D +R
Sbjct: 991 IRAAQGVKISAQGLEHAIAGTALYVLKPDDDLDR 1024
>03_03_0218 +
15506438-15506533,15508340-15508405,15508515-15510417,
15510857-15511347
Length = 851
Score = 26.2 bits (55), Expect = 4.6
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = +1
Query: 76 SFHPVKTGTHVKAPVHVHQADKWAPPLSIAPREQKLHLRV*RGVFLRSPLLISRLIVMRK 255
+F P + G V+ H AD +AP + +A R R VF + +R +V
Sbjct: 196 TFFPQRRGCRVRLYQDAHIADGFAPRIQLAGRRWYEPRRCWEDVF--DAISSARRMVYVA 253
Query: 256 GLSASSDLSL 285
G S ++D+ L
Sbjct: 254 GWSVNTDVVL 263
>07_01_0373 + 2783596-2784933
Length = 445
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -1
Query: 249 HHYQPGDQQGRPQKHAPLD-PQMQFLF 172
HH Q QQ + APLD P + FLF
Sbjct: 385 HHQQQQQQQQLQRLSAPLDAPNIPFLF 411
>01_06_0333 + 28528413-28529364,28529504-28529539,28529800-28530872
Length = 686
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = -2
Query: 176 CSLGAIDKGGAHLSAW*TWTGALTCVPVFTG 84
C A A SAW WT L VF G
Sbjct: 224 CQYAAPGDASALRSAWAQWTAGLPAATVFLG 254
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,402,005
Number of Sequences: 37544
Number of extensions: 139382
Number of successful extensions: 338
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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