Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_I15
(294 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z32681-6|CAA83605.1| 257|Caenorhabditis elegans Hypothetical pr... 84 2e-17
Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z83223-4|CAB05716.2| 534|Caenorhabditis elegans Hypothetical pr... 27 3.1
U41039-6|AAK68626.1| 135|Caenorhabditis elegans Synapse defecti... 25 7.1
U41039-5|AAL11488.1| 357|Caenorhabditis elegans Synapse defecti... 25 7.1
U41039-4|AAL11489.1| 452|Caenorhabditis elegans Synapse defecti... 25 7.1
U41039-3|AAK68627.2| 537|Caenorhabditis elegans Synapse defecti... 25 7.1
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical... 25 7.1
Z82287-6|CAB05318.1| 312|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z80223-9|CAB02322.1| 312|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z68879-10|CAA93082.2| 473|Caenorhabditis elegans Hypothetical p... 25 9.4
>Z32681-6|CAA83605.1| 257|Caenorhabditis elegans Hypothetical
protein F56F3.5 protein.
Length = 257
Score = 83.8 bits (198), Expect = 2e-17
Identities = 45/68 (66%), Positives = 52/68 (76%)
Frame = +3
Query: 90 KDWYAC*SAXPCSPSRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAERSFRK 269
K+WY A +RQVG TL+NRTQGTKIASEGLKGRVFEVSL DL +++E FRK
Sbjct: 26 KEWYDI-KAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDL---NNSEADFRK 81
Query: 270 FRLIAEDV 293
F+LIAEDV
Sbjct: 82 FKLIAEDV 89
>Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical
protein C38C10.5b protein.
Length = 1374
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 97 GTHVKAPVHVHQADKWAPPLSIAPREQKL 183
GT+ + P + +A + PP I PREQKL
Sbjct: 82 GTYNRMPSKIKEA--FIPPAKITPREQKL 108
>Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical
protein C38C10.5a protein.
Length = 1368
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 97 GTHVKAPVHVHQADKWAPPLSIAPREQKL 183
GT+ + P + +A + PP I PREQKL
Sbjct: 82 GTYNRMPSKIKEA--FIPPAKITPREQKL 108
>Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical
protein C38C10.5b protein.
Length = 1374
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 97 GTHVKAPVHVHQADKWAPPLSIAPREQKL 183
GT+ + P + +A + PP I PREQKL
Sbjct: 82 GTYNRMPSKIKEA--FIPPAKITPREQKL 108
>Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical
protein C38C10.5a protein.
Length = 1368
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 97 GTHVKAPVHVHQADKWAPPLSIAPREQKL 183
GT+ + P + +A + PP I PREQKL
Sbjct: 82 GTYNRMPSKIKEA--FIPPAKITPREQKL 108
>Z83223-4|CAB05716.2| 534|Caenorhabditis elegans Hypothetical
protein E01G4.4 protein.
Length = 534
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 255 FPHHYQPGDQQGRPQKHAPLDPQMQ 181
+ ++ Q QQGRPQ++A PQ Q
Sbjct: 34 YGYNNQQQQQQGRPQQYAGYPPQRQ 58
>U41039-6|AAK68626.1| 135|Caenorhabditis elegans Synapse defective
protein 9, isoformb protein.
Length = 135
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 88 VKTGTHVKAPVHVHQADKWAPPLSIAPREQK 180
V+ +H+ P+H+ + + PPL AP E+K
Sbjct: 79 VRKSSHL--PIHMTMSHGYPPPLVAAPVEEK 107
>U41039-5|AAL11488.1| 357|Caenorhabditis elegans Synapse defective
protein 9, isoforma protein.
Length = 357
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 88 VKTGTHVKAPVHVHQADKWAPPLSIAPREQK 180
V+ +H+ P+H+ + + PPL AP E+K
Sbjct: 301 VRKSSHL--PIHMTMSHGYPPPLVAAPVEEK 329
>U41039-4|AAL11489.1| 452|Caenorhabditis elegans Synapse defective
protein 9, isoformd protein.
Length = 452
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 88 VKTGTHVKAPVHVHQADKWAPPLSIAPREQK 180
V+ +H+ P+H+ + + PPL AP E+K
Sbjct: 396 VRKSSHL--PIHMTMSHGYPPPLVAAPVEEK 424
>U41039-3|AAK68627.2| 537|Caenorhabditis elegans Synapse defective
protein 9, isoformc protein.
Length = 537
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 88 VKTGTHVKAPVHVHQADKWAPPLSIAPREQK 180
V+ +H+ P+H+ + + PPL AP E+K
Sbjct: 379 VRKSSHL--PIHMTMSHGYPPPLVAAPVEEK 407
>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
protein Y66D12A.14 protein.
Length = 2870
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -3
Query: 217 TSKTRPFRPSDAIFVPWVRLTRVVPTCL 134
TSK +P R D I V R T CL
Sbjct: 2175 TSKAQPIRSDDVISVAGTRSTETTMKCL 2202
>Z82287-6|CAB05318.1| 312|Caenorhabditis elegans Hypothetical
protein ZK550.6 protein.
Length = 312
Score = 25.0 bits (52), Expect = 9.4
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Frame = -3
Query: 202 PFRPSDAIFVPWVRLTRVVPT--CLL---GEH-GXAL*HAYQSLXG 83
PFRP+D I W + ++ CL+ G H G L H Y G
Sbjct: 149 PFRPADFICCAWTAMEKITRANGCLVVVPGTHKGVLLPHEYPKWEG 194
>Z80223-9|CAB02322.1| 312|Caenorhabditis elegans Hypothetical
protein ZK550.6 protein.
Length = 312
Score = 25.0 bits (52), Expect = 9.4
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Frame = -3
Query: 202 PFRPSDAIFVPWVRLTRVVPT--CLL---GEH-GXAL*HAYQSLXG 83
PFRP+D I W + ++ CL+ G H G L H Y G
Sbjct: 149 PFRPADFICCAWTAMEKITRANGCLVVVPGTHKGVLLPHEYPKWEG 194
>Z68879-10|CAA93082.2| 473|Caenorhabditis elegans Hypothetical
protein K08F4.2 protein.
Length = 473
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 261 KTFPHHYQPGDQQGRPQKHAPLDPQMQFLFP 169
+T HH QP Q + HAPL Q + P
Sbjct: 278 QTQMHHMQPSMHQQQQGSHAPLYQQQRQSHP 308
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,047,687
Number of Sequences: 27780
Number of extensions: 114482
Number of successful extensions: 244
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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