Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_I14
         (322 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0226 + 19215091-19215172,19215281-19215394,19215508-192155...    31   0.27 
02_02_0211 + 7898434-7898574,7898759-7899349,7899575-7899821,790...    27   2.5  
08_01_0913 + 8995491-8995926,8995976-8997352,8997431-8998174,899...    27   3.3  
01_05_0127 - 18401461-18401464,18401868-18403876,18404060-184042...    27   3.3  
10_08_0330 - 16816497-16819952                                         27   4.3  
10_08_0542 - 18642683-18643816,18643952-18644193,18645152-18645386     26   5.7  
09_06_0097 + 20845417-20845518,20845728-20846581,20846666-208467...    26   7.6  
01_06_1682 - 39130696-39131705,39132355-39132583                       26   7.6  

>05_04_0226 +
           19215091-19215172,19215281-19215394,19215508-19215590,
           19215682-19215820,19215862-19216191,19216414-19216693,
           19216795-19216956,19217134-19217349,19217458-19217495,
           19217597-19217760,19217833-19217946,19218042-19218083,
           19218180-19218983
          Length = 855

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = -1

Query: 211 LRDRTEKNVILKP*EKVRGIKPLNETYAGATLVYTSEYSNTPLYARDTFRKKKP 50
           L+  + +NVI    EK+R  +  ++TY        +E +N    ARDT R  KP
Sbjct: 559 LKYASRENVIKTLQEKIREAEQTSKTYQQRVRELENELANEKKAARDTARSTKP 612


>02_02_0211 +
           7898434-7898574,7898759-7899349,7899575-7899821,
           7900020-7900118,7900158-7900321,7900371-7900870,
           7901007-7901256,7901461-7901549,7901823-7902064,
           7902175-7902479,7902798-7902906,7903150-7903313
          Length = 966

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -2

Query: 288 KK*NRYTSELLERSSLRQAWGR*G 217
           KK   YTS+L +R  LRQ WGR G
Sbjct: 647 KKVRSYTSDL-KRRDLRQQWGRLG 669


>08_01_0913 +
           8995491-8995926,8995976-8997352,8997431-8998174,
           8998402-8998748
          Length = 967

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 141 FNGFIPRTFSYGFNITFFSVRS 206
           F G IP TF    N+T+FSV++
Sbjct: 192 FTGNIPETFGKILNLTYFSVQN 213


>01_05_0127 -
           18401461-18401464,18401868-18403876,18404060-18404237,
           18404381-18404958,18405609-18405611
          Length = 923

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 182 YHIFFSSVAQQNPYLPQACRKELRSNSSLVYRFYFLN 292
           +H+  S      P LP+A  K+  S   L+  F +L+
Sbjct: 587 FHLHISDTVNDKPVLPRAKEKDASSRDGLIPGFPYLD 623


>10_08_0330 - 16816497-16819952
          Length = 1151

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 138 SFNGFIPRTFSYGFNITFFSVRSRSKIPISPKPAVRNC 251
           SF+G +PR    GF +  F+V   +     P P ++NC
Sbjct: 532 SFSGELPRNLCDGFALEHFTVNYNNFTGTLP-PCLKNC 568


>10_08_0542 - 18642683-18643816,18643952-18644193,18645152-18645386
          Length = 536

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = -1

Query: 151 KPLNETY---AGATLVYTSEYSNTPLYARD 71
           +PL E Y   A A +V+TS  S TPL+ ++
Sbjct: 320 RPLTEMYEAAAEADVVFTSTASETPLFTKE 349


>09_06_0097 +
           20845417-20845518,20845728-20846581,20846666-20846726,
           20847320-20847358,20847602-20847682
          Length = 378

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 185 HIFFSSVAQQNPYLPQACRKELRSNSSLVYRFYF 286
           HI++S++A  N +   AC  E R N  L    YF
Sbjct: 344 HIYYSTLAPNNVHAVYACISEFR-NDDLQSASYF 376


>01_06_1682 - 39130696-39131705,39132355-39132583
          Length = 412

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 163 LFLTVLISHFFQFGRAAKSLSPPSL 237
           L L +LI+ F      A SLSPPSL
Sbjct: 15  LVLAMLIATFAMLTEGATSLSPPSL 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,429,901
Number of Sequences: 37544
Number of extensions: 133424
Number of successful extensions: 374
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)