Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_I14
(322 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 29 0.75
U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of ... 28 1.7
U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of ... 28 1.7
U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of ... 28 1.7
AF039053-3|AAC25880.2| 349|Caenorhabditis elegans Hypothetical ... 27 2.3
Z81147-5|CAB03534.1| 663|Caenorhabditis elegans Hypothetical pr... 27 4.0
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 27 4.0
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 27 4.0
AF077545-3|AAC26304.1| 396|Caenorhabditis elegans Hypothetical ... 26 5.3
Z81030-2|CAB02704.2| 343|Caenorhabditis elegans Hypothetical pr... 25 9.2
AF068709-10|AAC19252.2| 345|Caenorhabditis elegans Seven tm rec... 25 9.2
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 29.1 bits (62), Expect = 0.75
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = +1
Query: 127 LRTSHLTVLFHGLFLTVLISHFFQFGRAAKSLSPPSLP*GT 249
+RT LT+LF L +T L + F G A S PP P GT
Sbjct: 1 MRTFQLTLLFTALAVTSLAAPRFSVGETA-SRRPPPPPKGT 40
>U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform c protein.
Length = 1375
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +1
Query: 79 RKAGYYCTRLCIRVSRLRTSHLTVLFHGLFLTVLISHFFQF 201
RK YYC+ +C + +L ++ ++ GL+ + + +H F +
Sbjct: 56 RKLKYYCSFICTPIKKLLSTFKLLIIIGLY-SFIGAHIFMY 95
>U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform a protein.
Length = 1544
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +1
Query: 79 RKAGYYCTRLCIRVSRLRTSHLTVLFHGLFLTVLISHFFQF 201
RK YYC+ +C + +L ++ ++ GL+ + + +H F +
Sbjct: 56 RKLKYYCSFICTPIKKLLSTFKLLIIIGLY-SFIGAHIFMY 95
>U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform b protein.
Length = 1720
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +1
Query: 79 RKAGYYCTRLCIRVSRLRTSHLTVLFHGLFLTVLISHFFQF 201
RK YYC+ +C + +L ++ ++ GL+ + + +H F +
Sbjct: 56 RKLKYYCSFICTPIKKLLSTFKLLIIIGLY-SFIGAHIFMY 95
>AF039053-3|AAC25880.2| 349|Caenorhabditis elegans Hypothetical
protein C45H4.13 protein.
Length = 349
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 111 YTSVAPAYVSFNGFIPRTFSYG 176
YTS +P+Y S++ + P SYG
Sbjct: 267 YTSYSPSYYSYSSYSPSYSSYG 288
>Z81147-5|CAB03534.1| 663|Caenorhabditis elegans Hypothetical
protein T09E11.7 protein.
Length = 663
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 96 LYSLVYTSVAPAYVSFNGFIPRTFSYGFN-ITFFSVRSRSKIP 221
L SL+Y V+P VSFN R++ + + R S IP
Sbjct: 178 LSSLIYYLVSPPDVSFNSVFARSWQFLIGMVVHLKQRRESSIP 220
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 102 SLVYTSVAPAYVSFNGFIPRTFSYGFNITFFSVRSRSKIPISPK 233
S Y+ +P+Y S G+ P + Y + +S S S P SP+
Sbjct: 1700 SPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPSYSPTSPQ 1743
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 102 SLVYTSVAPAYVSFNGFIPRTFSYGFNITFFSVRSRSKIPISPK 233
S Y+ +P+Y S G+ P + Y + +S S S P SP+
Sbjct: 1707 SPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPSYSPTSPQ 1750
>AF077545-3|AAC26304.1| 396|Caenorhabditis elegans Hypothetical
protein H41C03.1 protein.
Length = 396
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +3
Query: 66 NVSLA*SGVLLYSLVYTSVAPAYVSFNGFIPRTFSYG 176
N+ S V Y++ + P Y+ N F RTF G
Sbjct: 283 NIGPGKSAVFTYTVDKSVTEPVYIVINRFCDRTFGMG 319
>Z81030-2|CAB02704.2| 343|Caenorhabditis elegans Hypothetical
protein C01G10.2 protein.
Length = 343
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 121 SRLRTSHLTVLFHGLFLTVLISHFFQFGRAAK 216
+RL +S L V HGL + +SH+ F +K
Sbjct: 234 TRLFSSRLVVFNHGLVFSARVSHWNNFSFNSK 265
>AF068709-10|AAC19252.2| 345|Caenorhabditis elegans Seven tm
receptor protein 33 protein.
Length = 345
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 127 LRTSHLTVLFHGLFLTVLISHFFQFGRAAKS 219
L+ S TVLFH VL+ FF F +A+S
Sbjct: 257 LQISVPTVLFHMPIFPVLLGPFFNFEISAES 287
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,778,316
Number of Sequences: 27780
Number of extensions: 128904
Number of successful extensions: 382
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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