Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_I11
         (367 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025456-1|AAB70959.3|  438|Caenorhabditis elegans Hypothetical ...    27   3.1  
Z70307-11|CAA94337.1|  488|Caenorhabditis elegans Hypothetical p...    27   5.4  
AY559748-1|AAS72410.1|  671|Caenorhabditis elegans heat shock tr...    27   5.4  
AY559747-1|AAS72409.1|  671|Caenorhabditis elegans heat shock tr...    27   5.4  
AL033536-5|CAA22146.1|  671|Caenorhabditis elegans Hypothetical ...    27   5.4  
U29488-11|AAK93842.1|  753|Caenorhabditis elegans Hypothetical p...    26   9.5  

>AF025456-1|AAB70959.3|  438|Caenorhabditis elegans Hypothetical
           protein C46F9.4 protein.
          Length = 438

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 213 IHYFEQISNLCHGQQHSMQSTLRRIFPDKLCVYK 112
           +H F  IS L +G+++      R   P +LC++K
Sbjct: 9   VHTFNDISKLGNGKRYYSDIEKRHNIPWRLCIFK 42


>Z70307-11|CAA94337.1|  488|Caenorhabditis elegans Hypothetical
           protein C39E9.10 protein.
          Length = 488

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 240 TCV*CVWGVVALVYDKVTVSRW 305
           T V C WG  ALV+   T+S W
Sbjct: 225 TLVACTWGYTALVFVSGTLSWW 246


>AY559748-1|AAS72410.1|  671|Caenorhabditis elegans heat shock
           transcription factor 1 protein.
          Length = 671

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 87  LINKLKVLLYTRIVYLGIFSVT-CFALSAAGRDINSKFAQNNESQGPLRNSC 239
           L++ ++  L  R+   G+  +  C A   AG   NSK A+ N  +GP ++ C
Sbjct: 269 LVSVMQPGLSKRVAKRGVLEIDFCAANGTAGP--NSKRARMNSEEGPYKDVC 318


>AY559747-1|AAS72409.1|  671|Caenorhabditis elegans heat shock
           transcription factor 1 protein.
          Length = 671

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 87  LINKLKVLLYTRIVYLGIFSVT-CFALSAAGRDINSKFAQNNESQGPLRNSC 239
           L++ ++  L  R+   G+  +  C A   AG   NSK A+ N  +GP ++ C
Sbjct: 269 LVSVMQPGLSKRVAKRGVLEIDFCAANGTAGP--NSKRARMNSEEGPYKDVC 318


>AL033536-5|CAA22146.1|  671|Caenorhabditis elegans Hypothetical
           protein Y53C10A.12 protein.
          Length = 671

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 87  LINKLKVLLYTRIVYLGIFSVT-CFALSAAGRDINSKFAQNNESQGPLRNSC 239
           L++ ++  L  R+   G+  +  C A   AG   NSK A+ N  +GP ++ C
Sbjct: 269 LVSVMQPGLSKRVAKRGVLEIDFCAANGTAGP--NSKRARMNSEEGPYKDVC 318


>U29488-11|AAK93842.1|  753|Caenorhabditis elegans Hypothetical
           protein C56C10.11 protein.
          Length = 753

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 276 LTQLHPTHTIRRYMSSVMDLEIHYF-EQISNLCHGQQH 166
           L+ LH   +I   M ++  L   Y+ E++S L HG QH
Sbjct: 206 LSALHFNSSIPPGMQNIQSLVWQYYCEKLSILTHGTQH 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,425,551
Number of Sequences: 27780
Number of extensions: 160528
Number of successful extensions: 299
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)