Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_I10
         (424 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          20   10.0 
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          20   10.0 
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          20   10.0 
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          20   10.0 
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          20   10.0 
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          20   10.0 
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    20   10.0 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   10.0 

>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 328 LPGRKAMKQPELLVPAVNPSRVHLMQLT 411
           LPG+      EL    +NP  V L + T
Sbjct: 136 LPGKPTTTSDELKRDIINPEDVMLKRRT 163


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 328 LPGRKAMKQPELLVPAVNPSRVHLMQLT 411
           LPG+      EL    +NP  V L + T
Sbjct: 136 LPGKPTTTSDELKRDIINPEDVMLKRRT 163


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 328 LPGRKAMKQPELLVPAVNPSRVHLMQLT 411
           LPG+      EL    +NP  V L + T
Sbjct: 136 LPGKPTTTSDELKRDIINPEDVMLKRRT 163


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 328 LPGRKAMKQPELLVPAVNPSRVHLMQLT 411
           LPG+      EL    +NP  V L + T
Sbjct: 136 LPGKPTTTSDELKRDIINPEDVMLKRRT 163


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 328 LPGRKAMKQPELLVPAVNPSRVHLMQLT 411
           LPG+      EL    +NP  V L + T
Sbjct: 136 LPGKPTTTSDELKRDIINPEDVMLKRRT 163


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 328 LPGRKAMKQPELLVPAVNPSRVHLMQLT 411
           LPG+      EL    +NP  V L + T
Sbjct: 136 LPGKPTTTSDELKRDIINPEDVMLKRRT 163


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 328 LPGRKAMKQPELLVPAVNPSRVHLMQLT 411
           LPG+      EL    +NP  V L + T
Sbjct: 136 LPGKPTTTSDELKRDIINPEDVMLKRRT 163


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -2

Query: 291 NAQPCEGCFGLSQFDVQTHLLWCHSY 214
           NA  CEGC G  +  +  + ++   Y
Sbjct: 200 NALTCEGCKGFFRRSITKNAVYQCKY 225


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,958
Number of Sequences: 438
Number of extensions: 1426
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)