Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_I09
(275 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 46 8e-07
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 31 0.030
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 31 0.030
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 30 0.070
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc... 27 0.49
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 27 0.65
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 26 0.86
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 1.1
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 26 1.1
SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc... 26 1.1
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 25 1.5
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 25 1.5
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 24 3.5
SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr... 24 3.5
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 24 3.5
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 24 4.6
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual 24 4.6
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po... 23 6.1
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 23 6.1
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 23 8.0
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 23 8.0
SPAC24B11.08c |||COPII-coated vesicle component Erv46|Schizosacc... 23 8.0
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo... 23 8.0
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 46.4 bits (105), Expect = 8e-07
Identities = 21/24 (87%), Positives = 21/24 (87%)
Frame = +3
Query: 204 MQAIKCVVVGDGAVGITCLLISYT 275
M IKCVVVGDGAVG TCLLISYT
Sbjct: 1 MPTIKCVVVGDGAVGKTCLLISYT 24
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 31.1 bits (67), Expect = 0.030
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +3
Query: 216 KCVVVGDGAVGITCLLISYT 275
K V+VGDGA G TCLLI ++
Sbjct: 8 KLVIVGDGACGKTCLLIVFS 27
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 31.1 bits (67), Expect = 0.030
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +3
Query: 216 KCVVVGDGAVGITCLLISYT 275
K V+VGDGA G TCLLI ++
Sbjct: 8 KLVIVGDGACGKTCLLIVFS 27
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 29.9 bits (64), Expect = 0.070
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 216 KCVVVGDGAVGITCLLISYT 275
K VVVGDG G TCLLI ++
Sbjct: 16 KLVVVGDGGCGKTCLLIVFS 35
>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 27.1 bits (57), Expect = 0.49
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = +3
Query: 69 YTSVDCDAIVY*LLVVITICSALP 140
Y ++ C A++Y + ++I C+A+P
Sbjct: 158 YNTIVCSAVIYFIGILILTCTAIP 181
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 26.6 bits (56), Expect = 0.65
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +3
Query: 216 KCVVVGDGAVGITCLLISYT 275
K VVVGDGA G T LL +T
Sbjct: 10 KLVVVGDGACGKTSLLSVFT 29
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 26.2 bits (55), Expect = 0.86
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +3
Query: 213 IKCVVVGDGAVGITCLLISYT 275
IK +++GD VG +CLL+ ++
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFS 30
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 1.1
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 219 CVVVGDGAVGITCLL 263
C++VGD A G TC+L
Sbjct: 1872 CILVGDTATGKTCIL 1886
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.8 bits (54), Expect = 1.1
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -3
Query: 90 HHNQHSYKGTAQSLDNNNNFIS 25
+HN H Y+ TA+++D + F +
Sbjct: 1355 NHNIHVYRATAKNMDTDKRFFT 1376
>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 1.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 54 SLDNNNNFISLHWRLVPK 1
S++ NNNF+ W L+PK
Sbjct: 198 SINRNNNFLGNLWSLMPK 215
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 25.4 bits (53), Expect = 1.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 198 TNMQAIKCVVVGDGAVGITCLLI 266
T ++ K VVVGDG VG + L I
Sbjct: 4 TYLREYKLVVVGDGGVGKSALTI 26
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 25.4 bits (53), Expect = 1.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 213 IKCVVVGDGAVGITCLL 263
+K V++GD VG TCL+
Sbjct: 9 LKVVILGDSGVGKTCLM 25
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 24.2 bits (50), Expect = 3.5
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -3
Query: 96 RWHHNQHSYKGTAQSLDN 43
RW H +H +GT + L++
Sbjct: 973 RWMHGKHKERGTTRKLED 990
>SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 376
Score = 24.2 bits (50), Expect = 3.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 224 NTLDRLHICNSF*YFSQNKTQGMPHKTPR 138
NT+ L+IC + FS+N+ Q + TP+
Sbjct: 241 NTMGNLNICKTTEIFSKNREQLIFMGTPK 269
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 24.2 bits (50), Expect = 3.5
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +3
Query: 216 KCVVVGDGAVGITCLLISY 272
K +++GD VG +CLL+ +
Sbjct: 10 KLLLIGDSGVGKSCLLLRF 28
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 23.8 bits (49), Expect = 4.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 238 PSPTTTHLIACIFVTVSDIFHKIKHK 161
PSP T ++ C+F +FHK++ K
Sbjct: 376 PSPGT--VVFCVFDVTFAMFHKVRGK 399
>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 23.8 bits (49), Expect = 4.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 196 TVSDIFHKIKHKGCL 152
TV D+FHK+ + CL
Sbjct: 285 TVDDLFHKVPKERCL 299
>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 278
Score = 23.4 bits (48), Expect = 6.1
Identities = 8/32 (25%), Positives = 19/32 (59%)
Frame = -2
Query: 253 VIPTAPSPTTTHLIACIFVTVSDIFHKIKHKG 158
++P T++L+ C+F+ +S++ I+ G
Sbjct: 29 ILPVMIGLKTSYLVDCVFLEISELREIIEFVG 60
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 23.4 bits (48), Expect = 6.1
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -3
Query: 105 INTRWHHNQHSYKGTAQSLDNNNN 34
+ + HN SY + DNNNN
Sbjct: 764 LKRKGQHNSFSYDKSTLFYDNNNN 787
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 23.0 bits (47), Expect = 8.0
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = -2
Query: 250 IPTAPSPTTTHLIACIFVTV 191
+P PSP ++H ++C +T+
Sbjct: 337 LPFTPSPRSSHTLSCSGLTL 356
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 23.0 bits (47), Expect = 8.0
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3
Query: 84 NQHSYKGTAQSLDNNNN 34
N H+YKGT S+ N+++
Sbjct: 191 NLHAYKGTVTSIINDDS 207
>SPAC24B11.08c |||COPII-coated vesicle component
Erv46|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 23.0 bits (47), Expect = 8.0
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -1
Query: 200 CNSF*YFSQNKTQGMPHKTPRQRTTNCNHH*QSIHD 93
CN S N+ G H P + T N N H +HD
Sbjct: 197 CNLAGQLSVNRMAGNFHIAPGRSTQNGNQH---VHD 229
>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 569
Score = 23.0 bits (47), Expect = 8.0
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 235 SPTTTHLIACIFVTVSDIFHKIKHKGC 155
SP +L+ FV ++FH ++ +GC
Sbjct: 299 SPGKLYLVLA-FVNGGELFHHLQREGC 324
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,129,014
Number of Sequences: 5004
Number of extensions: 20411
Number of successful extensions: 76
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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