Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_I09
(275 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1357 + 35899480-35899578,35900247-35900334,35900438-359005... 42 5e-05
02_02_0624 - 12323702-12323777,12324219-12324304,12324360-123244... 42 5e-05
02_01_0155 - 1080923-1081024,1081111-1081176,1081306-1081370,108... 42 5e-05
01_01_0909 - 7163886-7163931,7164148-7164254,7164370-7164435,716... 41 2e-04
06_01_0907 + 7001946-7002050,7002389-7002476,7002606-7002679,700... 40 2e-04
05_06_0061 + 25274693-25274794,25274982-25275069,25275186-252752... 40 2e-04
02_05_0708 - 31103246-31103359,31104146-31104178,31104297-311043... 40 2e-04
05_04_0199 + 18980017-18980759,18981478-18981532 29 0.53
10_03_0038 - 7297210-7297248,7297361-7297429,7297524-7297731,729... 27 2.1
04_04_0191 + 23468410-23468455,23468560-23468699,23469119-234692... 27 2.1
02_04_0402 + 22618998-22619043,22619206-22619345,22620067-226201... 27 2.1
09_05_0006 - 20030673-20030895,20031432-20031478,20031597-200316... 27 2.8
01_06_0959 - 33362810-33363125,33363309-33363475,33363583-333644... 27 2.8
07_01_0926 - 7775536-7775616,7775695-7775787,7775903-7775965,777... 26 3.7
03_06_0475 + 34193951-34194023,34195414-34195486,34195572-341956... 26 3.7
08_02_1318 - 26111031-26111276,26112139-26112427,26112936-261130... 25 6.5
09_06_0029 + 20336634-20336881,20337737-20338208 25 8.7
06_03_0497 + 21424732-21424899,21424992-21425057,21425176-214256... 25 8.7
>02_05_1357 +
35899480-35899578,35900247-35900334,35900438-35900592,
35900652-35900715,35902910-35902974,35903061-35903126,
35903644-35903745
Length = 212
Score = 42.3 bits (95), Expect = 5e-05
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = +3
Query: 213 IKCVVVGDGAVGITCLLISYT 275
IKCV VGDGAVG TC+LISYT
Sbjct: 7 IKCVTVGDGAVGKTCMLISYT 27
>02_02_0624 -
12323702-12323777,12324219-12324304,12324360-12324425,
12324650-12324762,12324793-12324856,12324950-12325059,
12325473-12325560,12325651-12325749
Length = 233
Score = 42.3 bits (95), Expect = 5e-05
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = +3
Query: 213 IKCVVVGDGAVGITCLLISYT 275
IKCV VGDGAVG TC+LISYT
Sbjct: 7 IKCVTVGDGAVGKTCMLISYT 27
>02_01_0155 -
1080923-1081024,1081111-1081176,1081306-1081370,
1081938-1082001,1082359-1082507,1082591-1082678,
1083757-1083855
Length = 210
Score = 42.3 bits (95), Expect = 5e-05
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = +3
Query: 213 IKCVVVGDGAVGITCLLISYT 275
IKCV VGDGAVG TC+LISYT
Sbjct: 7 IKCVTVGDGAVGKTCMLISYT 27
>01_01_0909 -
7163886-7163931,7164148-7164254,7164370-7164435,
7164720-7164784,7164937-7165000,7165685-7165794,
7165972-7166059,7166100-7166297
Length = 247
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/31 (58%), Positives = 21/31 (67%)
Frame = +3
Query: 183 ISETVTNMQAIKCVVVGDGAVGITCLLISYT 275
+S + IKCV VGDGAVG TC+LI YT
Sbjct: 1 MSSAAAATRFIKCVTVGDGAVGKTCMLICYT 31
>06_01_0907 +
7001946-7002050,7002389-7002476,7002606-7002679,
7002829-7002892,7004355-7004419,7004557-7004622,
7004725-7004757,7004968-7005045,7005295-7005303
Length = 193
Score = 40.3 bits (90), Expect = 2e-04
Identities = 17/21 (80%), Positives = 18/21 (85%)
Frame = +3
Query: 213 IKCVVVGDGAVGITCLLISYT 275
IKCV VGDGAVG TC+LI YT
Sbjct: 9 IKCVTVGDGAVGKTCMLICYT 29
>05_06_0061 +
25274693-25274794,25274982-25275069,25275186-25275295,
25275542-25275605,25275713-25275777,25275864-25275929,
25276084-25276199,25276382-25276415
Length = 214
Score = 40.3 bits (90), Expect = 2e-04
Identities = 17/21 (80%), Positives = 18/21 (85%)
Frame = +3
Query: 213 IKCVVVGDGAVGITCLLISYT 275
IKCV VGDGAVG TC+LI YT
Sbjct: 8 IKCVTVGDGAVGKTCMLICYT 28
>02_05_0708 -
31103246-31103359,31104146-31104178,31104297-31104362,
31104532-31104596,31105456-31105519,31105629-31105738,
31105886-31105973,31106328-31106432
Length = 214
Score = 40.3 bits (90), Expect = 2e-04
Identities = 17/21 (80%), Positives = 18/21 (85%)
Frame = +3
Query: 213 IKCVVVGDGAVGITCLLISYT 275
IKCV VGDGAVG TC+LI YT
Sbjct: 9 IKCVTVGDGAVGKTCMLICYT 29
>05_04_0199 + 18980017-18980759,18981478-18981532
Length = 265
Score = 29.1 bits (62), Expect = 0.53
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +3
Query: 126 CSALPRRFVRHPLCFIL*KISETVTNMQAIKCVVVGDGA 242
CS LPRR R+P C L K E +Q + V G G+
Sbjct: 135 CSRLPRRRCRNPRCRGLVKALEFDVQLQTEEAVRAGTGS 173
>10_03_0038 -
7297210-7297248,7297361-7297429,7297524-7297731,
7297829-7297911,7298859-7298998,7299132-7299183
Length = 196
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 216 KCVVVGDGAVGITCLLISYT 275
K V +GD VG +CLL+ +T
Sbjct: 10 KFVTIGDAGVGKSCLLLQFT 29
>04_04_0191 +
23468410-23468455,23468560-23468699,23469119-23469201,
23469346-23469550,23469632-23469735,23470290-23470449
Length = 245
Score = 27.1 bits (57), Expect = 2.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 216 KCVVVGDGAVGITCLLISYT 275
K +++GD VG +CLL+ +T
Sbjct: 8 KYIIIGDTGVGKSCLLLQFT 27
>02_04_0402 +
22618998-22619043,22619206-22619345,22620067-22620149,
22620234-22620438,22620524-22620592,22621099-22621188
Length = 210
Score = 27.1 bits (57), Expect = 2.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 216 KCVVVGDGAVGITCLLISYT 275
K +++GD VG +CLL+ +T
Sbjct: 8 KYIIIGDTGVGKSCLLLQFT 27
>09_05_0006 -
20030673-20030895,20031432-20031478,20031597-20031665,
20032590-20032725,20032900-20033067,20034286-20034354,
20034535-20034631,20034742-20034820,20035702-20035872
Length = 352
Score = 26.6 bits (56), Expect = 2.8
Identities = 8/45 (17%), Positives = 29/45 (64%)
Frame = -2
Query: 220 HLIACIFVTVSDIFHKIKHKGCLTKRLGNALQIVITTSNQYTMAS 86
H +C+ + S++FH + + L + + + ++ ++++++Q+ +A+
Sbjct: 104 HKKSCVVFSESNLFHFLVERCALARGISSIIRSLLSSNDQWCIAN 148
>01_06_0959 -
33362810-33363125,33363309-33363475,33363583-33364410,
33364483-33364719,33365455-33365871,33365951-33366412,
33367197-33367382
Length = 870
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/46 (23%), Positives = 26/46 (56%)
Frame = -3
Query: 153 SQNASATHYKL*SPLAINTRWHHNQHSYKGTAQSLDNNNNFISLHW 16
S + +H+ SP +T +H+N+++ + ++D++ N + HW
Sbjct: 451 SSSRGTSHFFAISPYCGSTSFHYNENNLAENSYAVDSSVNH-TAHW 495
>07_01_0926 -
7775536-7775616,7775695-7775787,7775903-7775965,
7776326-7776423,7776661-7776761,7776865-7776937,
7778575-7778647
Length = 193
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +3
Query: 213 IKCVVVGDGAVGITCLLISYT 275
IK +++GD VG +CLL+ ++
Sbjct: 16 IKLLLIGDSGVGKSCLLLRFS 36
>03_06_0475 +
34193951-34194023,34195414-34195486,34195572-34195672,
34195912-34196009,34196326-34196388,34196534-34196626,
34196697-34196774
Length = 192
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +3
Query: 213 IKCVVVGDGAVGITCLLISYT 275
IK +++GD VG +CLL+ ++
Sbjct: 16 IKLLLIGDSGVGKSCLLLRFS 36
>08_02_1318 -
26111031-26111276,26112139-26112427,26112936-26113036,
26113628-26113878,26114842-26114865,26115793-26116129
Length = 415
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 186 SETVTNMQAIKCVVVGDGAVGITCLLISY 272
SE T K V++GD AVG + LL Y
Sbjct: 5 SEGETEEYLFKVVIIGDSAVGKSNLLSRY 33
>09_06_0029 + 20336634-20336881,20337737-20338208
Length = 239
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +3
Query: 216 KCVVVGDGAVGITCLLISYT 275
K VVVGD AVG T LL +T
Sbjct: 24 KVVVVGDSAVGKTQLLGRFT 43
>06_03_0497 +
21424732-21424899,21424992-21425057,21425176-21425634,
21425945-21426088,21426172-21426306,21426418-21426808,
21427256-21427428,21427508-21427615,21427715-21427810,
21427896-21428003,21428644-21428792,21428924-21428925,
21429071-21429207,21429538-21429842,21430922-21431099,
21431192-21431305,21431373-21431504,21431610-21431843
Length = 1032
Score = 25.0 bits (52), Expect = 8.7
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -1
Query: 179 SQNKTQGMPHKTPRQRTTNCNHH 111
+Q+++ +PHK+ Q C HH
Sbjct: 603 TQDESDNIPHKSTNQPKFECLHH 625
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,213,504
Number of Sequences: 37544
Number of extensions: 128488
Number of successful extensions: 333
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 268461864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -