Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_I08
(274 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 115 1e-27
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 115 1e-27
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 102 8e-24
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 101 2e-23
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 77 6e-16
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 52 1e-08
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 44 3e-06
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 31 0.022
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 27 0.63
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 1.1
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 25 1.9
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 25 2.5
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 24 3.4
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 24 4.4
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce... 24 4.4
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar... 23 5.9
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 23 5.9
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 23 7.8
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 115 bits (277), Expect = 1e-27
Identities = 52/62 (83%), Positives = 59/62 (95%)
Frame = +3
Query: 87 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTSPSYVAFTDTERLIGDAAENQVAMNPNN 266
++GIDLGTTYSCVG F + +VEIIANDQGNRT+PSYVAFTDTERLIGDAA+NQVAMNP+N
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 267 TI 272
TI
Sbjct: 64 TI 65
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 115 bits (277), Expect = 1e-27
Identities = 52/62 (83%), Positives = 59/62 (95%)
Frame = +3
Query: 87 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTSPSYVAFTDTERLIGDAAENQVAMNPNN 266
++GIDLGTTYSCVG F + +VEIIANDQGNRT+PSYVAFTDTERLIGDAA+NQVAMNP+N
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 267 TI 272
TI
Sbjct: 64 TI 65
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 102 bits (245), Expect = 8e-24
Identities = 45/62 (72%), Positives = 54/62 (87%)
Frame = +3
Query: 87 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTSPSYVAFTDTERLIGDAAENQVAMNPNN 266
A+GIDLGTTYSCV V++ VEII NDQG RT+PS+VAFT+TERL+GDAA+NQ AMNP N
Sbjct: 8 AIGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNPRN 67
Query: 267 TI 272
T+
Sbjct: 68 TV 69
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 101 bits (241), Expect = 2e-23
Identities = 44/61 (72%), Positives = 53/61 (86%)
Frame = +3
Query: 90 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTSPSYVAFTDTERLIGDAAENQVAMNPNNT 269
+GIDLGTTYSCV V ++G+VEIIANDQGNR +PSYVAFT+ ERL+G+AA+NQ NP NT
Sbjct: 38 IGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENT 97
Query: 270 I 272
I
Sbjct: 98 I 98
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 76.6 bits (180), Expect = 6e-16
Identities = 35/69 (50%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Frame = +3
Query: 66 NKMAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTSPSYVAFT-DTERLIGDAAEN 242
N+ K P +GIDLGTT SC+ + + ++IAN +G RT+PS VAFT D ERL+G +A+
Sbjct: 45 NEKVKGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKR 104
Query: 243 QVAMNPNNT 269
Q +NP NT
Sbjct: 105 QAVINPENT 113
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 52.0 bits (119), Expect = 1e-08
Identities = 21/66 (31%), Positives = 42/66 (63%)
Frame = +3
Query: 75 AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTSPSYVAFTDTERLIGDAAENQVAM 254
++ VGID G + + + V ++ +++I N+ NR++PS V++ + R +G+AA++ A
Sbjct: 3 SRTNVVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEAS 62
Query: 255 NPNNTI 272
N NT+
Sbjct: 63 NFRNTV 68
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 44.4 bits (100), Expect = 3e-06
Identities = 18/61 (29%), Positives = 34/61 (55%)
Frame = +3
Query: 90 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTSPSYVAFTDTERLIGDAAENQVAMNPNNT 269
+GI G S + + GK +++AN++GNR PS +++ + G A Q+ N +N+
Sbjct: 27 IGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQEYHGVQARGQLVRNADNS 86
Query: 270 I 272
+
Sbjct: 87 V 87
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 31.5 bits (68), Expect = 0.022
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +3
Query: 90 VGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTSPSYVAFTDTERLIGDAAENQVAMNPNN 266
+ ID GT ++ + + G +EI+ R S VAF ER+ G A N P +
Sbjct: 25 LAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFPAH 84
Query: 267 TI 272
+I
Sbjct: 85 SI 86
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 26.6 bits (56), Expect = 0.63
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = -3
Query: 254 HRNLVLGCITDKTLSVGERN 195
H++++L C +D+T+ +GE N
Sbjct: 321 HQDIILSCSSDRTIFLGELN 340
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 25.8 bits (54), Expect = 1.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 165 DQGNRTSPSYVAFTDTERLIGDAAENQVA 251
D+G T+ S+ +F D + + GDA E + A
Sbjct: 49 DEGLNTARSFSSFQDLKGMSGDAKEQESA 77
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 25.0 bits (52), Expect = 1.9
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Frame = +1
Query: 82 HQQLVSI--WAQPTLVWVCSSMGKLRSSPMTRA---TELLPRTLRS 204
H +VS WA L+W CS G + + A ++LPR S
Sbjct: 314 HDSIVSTMHWASTELLWSCSKDGIFSQTRVENAFNCIDMLPRATSS 359
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 24.6 bits (51), Expect = 2.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 93 GIDLGTTYSCVGVFQHGKVEIIANDQGNR 179
G LG TY+ V Q G VE+ D N+
Sbjct: 1279 GCFLGNTYAFASVTQDGSVEVHRLDVNNQ 1307
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 24.2 bits (50), Expect = 3.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 152 LNFPMLEHTHTRVGCAQIDTN 90
L+ + EHTH R+ Q+D+N
Sbjct: 375 LDHELYEHTHKRMTQMQVDSN 395
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 23.8 bits (49), Expect = 4.4
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = +3
Query: 87 AVGIDLGTTYSCVGVFQHGKVEIIAND 167
A+G LG Y+C+ +F + +A +
Sbjct: 428 AIGFKLGYIYACINLFSSFMIFFLAKE 454
>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 23.8 bits (49), Expect = 4.4
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +3
Query: 123 VGVFQHGKVEIIANDQGNRTSPSYV 197
+ +F H K ++I QG + +PS +
Sbjct: 277 ISIFDHSKKKVIGRFQGVKGAPSSI 301
>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
Gda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 556
Score = 23.4 bits (48), Expect = 5.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 21 SYELFND*LSIRYKRNKMAKAPAVGIDLGTTYSCVGVFQ 137
S + +D S+ Y +K + + ID G+T S V V+Q
Sbjct: 113 SSSIDSDDCSVAYDNSKPVRQYVLMIDAGSTGSRVHVYQ 151
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 23.4 bits (48), Expect = 5.9
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -1
Query: 196 TYEGEVLLPWS 164
TYEGE+ PWS
Sbjct: 287 TYEGELRAPWS 297
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 23.0 bits (47), Expect = 7.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 78 KAPAVGIDLGTTYSCVGVFQHGKVEII 158
K PA+G D+G T + V + GK E I
Sbjct: 306 KTPAIGFDMGGTSTDVSRYD-GKFEHI 331
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,121,863
Number of Sequences: 5004
Number of extensions: 20352
Number of successful extensions: 66
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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