Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_I07
         (327 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc...    59   1e-10
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc...    59   1e-10
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    29   0.18 
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc...    27   0.54 
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    25   3.8  
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar...    24   5.1  
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    24   6.7  
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe...    24   6.7  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         24   6.7  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    24   6.7  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    24   6.7  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    24   6.7  
SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo...    23   8.8  
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    23   8.8  

>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 88

 Score = 59.3 bits (137), Expect = 1e-10
 Identities = 27/60 (45%), Positives = 44/60 (73%)
 Frame = +3

Query: 147 LFDKPTYEKLYKEVPQYKLITPAVVSERLKIRGSLARRALVELRDKGLIKQVVQHHGQVI 326
           +FDK   +++ KEVP +K I+ +V+ +R+KI GSLAR A+ +L ++G+I++V QH  Q I
Sbjct: 21  VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAI 80


>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 59.3 bits (137), Expect = 1e-10
 Identities = 27/60 (45%), Positives = 44/60 (73%)
 Frame = +3

Query: 147 LFDKPTYEKLYKEVPQYKLITPAVVSERLKIRGSLARRALVELRDKGLIKQVVQHHGQVI 326
           +FDK   +++ KEVP +K I+ +V+ +R+KI GSLAR A+ +L ++G+I++V QH  Q I
Sbjct: 21  VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAI 80


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 29.1 bits (62), Expect = 0.18
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 175  SFSYVGLSNNTWLFNLSRTFPFDHFFFLALPPPDPSFFFW 56
            SF Y  L NN++L  +S +   ++ F++  PPP  S+  W
Sbjct: 1008 SFIYGSLQNNSFLSRVSPSSLEENVFYIQHPPP-KSYLSW 1046


>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 150

 Score = 27.5 bits (58), Expect = 0.54
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -3

Query: 208 VISLYCGTSLYSFSYV-GLSNNTWLFNLSRTFPFDHFFFLALPPP 77
           V+ + C  +L  F ++ G+ N         T PF +F+ L  PPP
Sbjct: 37  VVVIICIAALIFFFFIIGIINRRRTKKGQATIPFTNFYPLTAPPP 81


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 225 QRQQRV*SACTVVLPYTVSHMWV 157
           Q+Q R+     +VLP+TV  +W+
Sbjct: 75  QKQWRILRITFLVLPFTVGGLWI 97


>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 153 DKPTYEKLYKEVPQYKLITPAVVSERLK--IRGSLARRALVELRDKGLI 293
           +K  YE L K    Y       VS  LK  +   +A++AL +LRD GLI
Sbjct: 18  EKLVYEYLRKTNRPYSATD---VSANLKNVVSKQVAQKALEQLRDTGLI 63


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 162 TYEKLYKEVPQYKLITPAVVS 224
           TY+K+Y E P  K++   + S
Sbjct: 96  TYKKIYNEYPPTKILVQEIAS 116


>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = -3

Query: 67  FFFWVF--CGCLAEAFVSFLASC 5
           FF + F   GC+  AF+SF A+C
Sbjct: 99  FFGYSFDRVGCMELAFISFSAAC 121


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 154 SNNTWLFNLSRTFPFDHFFFLAL 86
           S N+W+F L  TF     F+L+L
Sbjct: 316 SRNSWIFTLLLTFTQLTIFYLSL 338


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 222 SERLKIRGSLARRALVELRDKGLIKQVVQHHGQVI 326
           +ERL +  ++ R ALVEL+   LIKQ      QV+
Sbjct: 185 NERLNL-DTIKRNALVELKKLRLIKQQESLRHQVM 218


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 192 VVLPYTVSHMWVCQTTLGCLTCHGLF 115
           V+    V + W C+TT+ CL    LF
Sbjct: 74  VIYALRVPNWWPCKTTVVCLILFLLF 99


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 204 ITPAVVSERLKIRGSLARRALVEL 275
           + PA++ + ++ R SLA+  LVE+
Sbjct: 191 VLPAIIEQIIECRDSLAQEYLVEV 214


>SPAC4G8.06c |trm12||tRNA methyltransferase Trm12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -3

Query: 241 RIFNLSETTAGVIS-LYCGTSLYSFSYVGLSNNT 143
           R+ N S     +I+ LY G   ++FSYV    +T
Sbjct: 237 RVLNFSYIKDEIIADLYAGIGYFTFSYVKAGAST 270


>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 194 LWYFLIQFLICGFVKQ 147
           +W F+   L CGF+K+
Sbjct: 326 IWAFIFYLLRCGFLKE 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,163,164
Number of Sequences: 5004
Number of extensions: 19973
Number of successful extensions: 69
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)