Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_I07
(327 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M64716-1|AAA16105.1| 125|Homo sapiens ribosomal protein protein. 100 2e-21
BC004986-1|AAH04986.1| 125|Homo sapiens ribosomal protein S25 p... 100 2e-21
BC004294-1|AAH04294.1| 125|Homo sapiens ribosomal protein S25 p... 100 2e-21
BC003537-1|AAH03537.1| 125|Homo sapiens ribosomal protein S25 p... 100 2e-21
AB061844-1|BAB79482.1| 125|Homo sapiens ribosomal protein S25 p... 100 2e-21
Z95326-1|CAI20271.2| 408|Homo sapiens solute carrier family 35,... 29 4.4
BX640761-1|CAE45867.1| 228|Homo sapiens hypothetical protein pr... 29 4.4
BC114925-1|AAI14926.1| 408|Homo sapiens SLC35F1 protein protein. 29 4.4
BC028615-1|AAH28615.1| 408|Homo sapiens solute carrier family 3... 29 4.4
AL449196-1|CAI16177.2| 408|Homo sapiens solute carrier family 3... 29 4.4
AL136478-1|CAM28261.1| 408|Homo sapiens solute carrier family 3... 29 4.4
AL133379-1|CAI19872.2| 408|Homo sapiens solute carrier family 3... 29 4.4
U88879-1|AAC34134.1| 904|Homo sapiens Toll-like receptor 3 prot... 28 7.7
DQ445682-1|ABE01399.1| 904|Homo sapiens Toll-like receptor 3 is... 28 7.7
BC096335-1|AAH96335.1| 904|Homo sapiens toll-like receptor 3 pr... 28 7.7
BC096334-1|AAH96334.1| 904|Homo sapiens toll-like receptor 3 pr... 28 7.7
BC096333-1|AAH96333.1| 904|Homo sapiens toll-like receptor 3 pr... 28 7.7
BC094737-1|AAH94737.1| 904|Homo sapiens toll-like receptor 3 pr... 28 7.7
BC059372-1|AAH59372.1| 870|Homo sapiens TLR3 protein protein. 28 7.7
>M64716-1|AAA16105.1| 125|Homo sapiens ribosomal protein protein.
Length = 125
Score = 99.5 bits (237), Expect = 2e-21
Identities = 51/65 (78%), Positives = 53/65 (81%)
Frame = +3
Query: 132 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKIRGSLARRALVELRDKGLIKQVVQH 311
LNN VLFDK TY+KL KEVP YKLITPAVVSERLKIRGSLAR AL EL KGLIK V +H
Sbjct: 44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKH 103
Query: 312 HGQVI 326
QVI
Sbjct: 104 RAQVI 108
>BC004986-1|AAH04986.1| 125|Homo sapiens ribosomal protein S25
protein.
Length = 125
Score = 99.5 bits (237), Expect = 2e-21
Identities = 51/65 (78%), Positives = 53/65 (81%)
Frame = +3
Query: 132 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKIRGSLARRALVELRDKGLIKQVVQH 311
LNN VLFDK TY+KL KEVP YKLITPAVVSERLKIRGSLAR AL EL KGLIK V +H
Sbjct: 44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKH 103
Query: 312 HGQVI 326
QVI
Sbjct: 104 RAQVI 108
>BC004294-1|AAH04294.1| 125|Homo sapiens ribosomal protein S25
protein.
Length = 125
Score = 99.5 bits (237), Expect = 2e-21
Identities = 51/65 (78%), Positives = 53/65 (81%)
Frame = +3
Query: 132 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKIRGSLARRALVELRDKGLIKQVVQH 311
LNN VLFDK TY+KL KEVP YKLITPAVVSERLKIRGSLAR AL EL KGLIK V +H
Sbjct: 44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKH 103
Query: 312 HGQVI 326
QVI
Sbjct: 104 RAQVI 108
>BC003537-1|AAH03537.1| 125|Homo sapiens ribosomal protein S25
protein.
Length = 125
Score = 99.5 bits (237), Expect = 2e-21
Identities = 51/65 (78%), Positives = 53/65 (81%)
Frame = +3
Query: 132 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKIRGSLARRALVELRDKGLIKQVVQH 311
LNN VLFDK TY+KL KEVP YKLITPAVVSERLKIRGSLAR AL EL KGLIK V +H
Sbjct: 44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKH 103
Query: 312 HGQVI 326
QVI
Sbjct: 104 RAQVI 108
>AB061844-1|BAB79482.1| 125|Homo sapiens ribosomal protein S25
protein.
Length = 125
Score = 99.5 bits (237), Expect = 2e-21
Identities = 51/65 (78%), Positives = 53/65 (81%)
Frame = +3
Query: 132 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKIRGSLARRALVELRDKGLIKQVVQH 311
LNN VLFDK TY+KL KEVP YKLITPAVVSERLKIRGSLAR AL EL KGLIK V +H
Sbjct: 44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKH 103
Query: 312 HGQVI 326
QVI
Sbjct: 104 RAQVI 108
>Z95326-1|CAI20271.2| 408|Homo sapiens solute carrier family 35,
member F1 protein.
Length = 408
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 232 NLSETTAGVISLYCGTSLYSFSYVGL 155
NLS TA + SL+CG L+ + + GL
Sbjct: 313 NLSLLTADLYSLFCGLFLFHYKFSGL 338
>BX640761-1|CAE45867.1| 228|Homo sapiens hypothetical protein
protein.
Length = 228
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 232 NLSETTAGVISLYCGTSLYSFSYVGL 155
NLS TA + SL+CG L+ + + GL
Sbjct: 133 NLSLLTADLYSLFCGLFLFHYKFSGL 158
>BC114925-1|AAI14926.1| 408|Homo sapiens SLC35F1 protein protein.
Length = 408
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 232 NLSETTAGVISLYCGTSLYSFSYVGL 155
NLS TA + SL+CG L+ + + GL
Sbjct: 313 NLSLLTADLYSLFCGLFLFHYKFSGL 338
>BC028615-1|AAH28615.1| 408|Homo sapiens solute carrier family 35,
member F1 protein.
Length = 408
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 232 NLSETTAGVISLYCGTSLYSFSYVGL 155
NLS TA + SL+CG L+ + + GL
Sbjct: 313 NLSLLTADLYSLFCGLFLFHYKFSGL 338
>AL449196-1|CAI16177.2| 408|Homo sapiens solute carrier family 35,
member F1 protein.
Length = 408
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 232 NLSETTAGVISLYCGTSLYSFSYVGL 155
NLS TA + SL+CG L+ + + GL
Sbjct: 313 NLSLLTADLYSLFCGLFLFHYKFSGL 338
>AL136478-1|CAM28261.1| 408|Homo sapiens solute carrier family 35,
member F1 protein.
Length = 408
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 232 NLSETTAGVISLYCGTSLYSFSYVGL 155
NLS TA + SL+CG L+ + + GL
Sbjct: 313 NLSLLTADLYSLFCGLFLFHYKFSGL 338
>AL133379-1|CAI19872.2| 408|Homo sapiens solute carrier family 35,
member F1 protein.
Length = 408
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 232 NLSETTAGVISLYCGTSLYSFSYVGL 155
NLS TA + SL+CG L+ + + GL
Sbjct: 313 NLSLLTADLYSLFCGLFLFHYKFSGL 338
>U88879-1|AAC34134.1| 904|Homo sapiens Toll-like receptor 3
protein.
Length = 904
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -3
Query: 181 LYSFSYVGLSNNTWLFNLSRTFPFDHFFFLALPPPDPSFFFWVFC 47
L+S S GL N +L NL R+F +LP D F W+ C
Sbjct: 313 LFSHSLHGLFNVRYL-NLKRSFTKQSISLASLPKIDDFSFQWLKC 356
>DQ445682-1|ABE01399.1| 904|Homo sapiens Toll-like receptor 3
isoform NT2-N protein.
Length = 904
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -3
Query: 181 LYSFSYVGLSNNTWLFNLSRTFPFDHFFFLALPPPDPSFFFWVFC 47
L+S S GL N +L NL R+F +LP D F W+ C
Sbjct: 313 LFSHSLHGLFNVRYL-NLKRSFTKQSISLASLPKIDDFSFQWLKC 356
>BC096335-1|AAH96335.1| 904|Homo sapiens toll-like receptor 3
protein.
Length = 904
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -3
Query: 181 LYSFSYVGLSNNTWLFNLSRTFPFDHFFFLALPPPDPSFFFWVFC 47
L+S S GL N +L NL R+F +LP D F W+ C
Sbjct: 313 LFSHSLHGLFNVRYL-NLKRSFTKQSISLASLPKIDDFSFQWLKC 356
>BC096334-1|AAH96334.1| 904|Homo sapiens toll-like receptor 3
protein.
Length = 904
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -3
Query: 181 LYSFSYVGLSNNTWLFNLSRTFPFDHFFFLALPPPDPSFFFWVFC 47
L+S S GL N +L NL R+F +LP D F W+ C
Sbjct: 313 LFSHSLHGLFNVRYL-NLKRSFTKQSISLASLPKIDDFSFQWLKC 356
>BC096333-1|AAH96333.1| 904|Homo sapiens toll-like receptor 3
protein.
Length = 904
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -3
Query: 181 LYSFSYVGLSNNTWLFNLSRTFPFDHFFFLALPPPDPSFFFWVFC 47
L+S S GL N +L NL R+F +LP D F W+ C
Sbjct: 313 LFSHSLHGLFNVRYL-NLKRSFTKQSISLASLPKIDDFSFQWLKC 356
>BC094737-1|AAH94737.1| 904|Homo sapiens toll-like receptor 3
protein.
Length = 904
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -3
Query: 181 LYSFSYVGLSNNTWLFNLSRTFPFDHFFFLALPPPDPSFFFWVFC 47
L+S S GL N +L NL R+F +LP D F W+ C
Sbjct: 313 LFSHSLHGLFNVRYL-NLKRSFTKQSISLASLPKIDDFSFQWLKC 356
>BC059372-1|AAH59372.1| 870|Homo sapiens TLR3 protein protein.
Length = 870
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -3
Query: 181 LYSFSYVGLSNNTWLFNLSRTFPFDHFFFLALPPPDPSFFFWVFC 47
L+S S GL N +L NL R+F +LP D F W+ C
Sbjct: 313 LFSHSLHGLFNVRYL-NLKRSFTKQSISLASLPKIDDFSFQWLKC 356
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,355,503
Number of Sequences: 237096
Number of extensions: 822892
Number of successful extensions: 5451
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 5403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5451
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1685725862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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