Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_I06
         (318 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    81   4e-17
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    29   0.23 
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   1.6  
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc...    25   2.8  
SPAC18G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   4.8  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    24   6.4  
SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi...    23   8.5  
SPAC328.07c |||heavy metal ion homeostasis protein |Schizosaccha...    23   8.5  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    23   8.5  

>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 81.0 bits (191), Expect = 4e-17
 Identities = 38/100 (38%), Positives = 55/100 (55%)
 Frame = +3

Query: 18  DHYQMSGIEWDPTGRYVVTGVSSLKCKMDCGYYIWSFQGKIIRRVMKEGFAQFHWRPRPP 197
           +H+ M+ +EWDP+GRYV T  +  + K++ GY +  F+G ++R  M   F QF WRPRPP
Sbjct: 568 EHFGMTELEWDPSGRYVTTSSTIWRHKLENGYRLCDFRGTLLREEMIGEFKQFIWRPRPP 627

Query: 198 SLLTXXXXXXXXXXXXXYYSQFESKDRMRSSKASEELVAK 317
           S LT             Y   F+ +D    S A+ EL A+
Sbjct: 628 SPLTKEDMKKIRKKLKDYNRLFDEEDIAEQSSANRELAAR 667


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 28.7 bits (61), Expect = 0.23
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
 Frame = +3

Query: 33  SGIEWDPTGRYVVTGVSSLKCKMDCGYYIWSFQGKIIR-----RVMKEGFAQFHWRP 188
           +GI W P G ++      L+  +D   YI+   G +       R+++ GF+ F W P
Sbjct: 193 TGIHWSPDGNWLAV----LENVLDAVVYIYHRTGLLFHEYRPNRLIEVGFSDFEWSP 245


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 68  GDWSVLSQVQDGLRLLHLVLPG 133
           GD SV+ Q  DG+     VLPG
Sbjct: 160 GDLSVVDQTGDGIAFCQTVLPG 181


>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +3

Query: 15  GDHYQMSGIEWDPTGRYVVTGVSSLKCKMDCGYYIWSFQGKI 140
           G  + + G+ W    R+V  G S      D   Y+WS  G +
Sbjct: 267 GQEHNLLGVAWSRNSRFVGAGSS------DKNVYVWSATGDL 302


>SPAC18G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 114

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
 Frame = +3

Query: 78  VSSLKCKMDCGYYIWSFQGKII---RRVMKEGF 167
           V S+ C  D  + IW F G       +++KEGF
Sbjct: 24  VDSVNCVADLCHAIWMFNGGCADWRLQILKEGF 56


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 21  HYQMSGIEWDPTGRYVVT 74
           HY + G+ WDP  +Y+V+
Sbjct: 171 HY-VQGVCWDPLNQYIVS 187


>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 173 LSETFLHHSSNDFPLEGPDVIAAVHLALERGHSSHHIAS 57
           L + F   S  +F +  P  I A+H+ L  G ++ H+A+
Sbjct: 105 LFQDFSIESVPNFWIFKPKSIQAIHVDLSHGVTASHLAA 143


>SPAC328.07c |||heavy metal ion homeostasis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -2

Query: 179 VELSETFLHHSSNDFPLEGPDVIAAVHLAL-ERGHSSHHIASS--RIP 45
           VE SET   +SS    +EG +     HL+  + G+ S H+ SS  RIP
Sbjct: 39  VEYSETAPLYSSARASIEGEEAFYQ-HLSTPDPGNDSGHVRSSNDRIP 85


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 15  GDHYQMSGIEWDPTGRYVVTGVSSLKCKMDCGYYIWSFQGKIIRRVM 155
           GD Y  S + + P G+Y+ TGV   + +      IW    K + R++
Sbjct: 333 GDLYVRS-VAFSPDGKYLATGVEDQQIR------IWDIAQKRVYRLL 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,212,852
Number of Sequences: 5004
Number of extensions: 21100
Number of successful extensions: 65
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)