Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_I06
(318 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0985 - 22042801-22042963,22043019-22043138,22043261-220435... 89 5e-19
02_04_0544 - 23768808-23768910,23769005-23769030,23769379-237694... 38 0.001
05_04_0373 + 20732358-20732675,20733555-20734440,20734523-20735625 32 0.11
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306... 29 0.60
01_06_1557 - 38231826-38233391 29 0.79
08_01_0058 + 388989-389102,389226-389337,389457-389483,389787-38... 29 1.0
09_06_0046 + 20467240-20467586,20467627-20468116,20468815-20469426 28 1.8
02_05_1024 + 33582921-33583309,33583381-33583444 28 1.8
03_05_0994 + 29541109-29542527 27 3.2
03_01_0082 + 653041-653137,653219-653496,653596-653689,653804-65... 27 4.2
06_01_0914 - 7047865-7049223 26 7.4
01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965 26 7.4
06_03_0609 + 22710442-22713502,22713596-22713948 25 9.7
06_03_0599 + 22632625-22633030,22634733-22636724,22636819-22637171 25 9.7
06_03_0554 - 22057957-22058014,22058093-22058426,22058446-220589... 25 9.7
03_05_0701 - 26925252-26925578,26929233-26930513 25 9.7
>10_08_0985 -
22042801-22042963,22043019-22043138,22043261-22043562,
22044055-22044351,22044448-22044556,22044826-22045358,
22045446-22045644,22045741-22045865,22045937-22046020,
22046093-22046221,22046337-22046465,22046593-22046739,
22047106-22047346,22047859-22047980
Length = 899
Score = 89.4 bits (212), Expect = 5e-19
Identities = 41/99 (41%), Positives = 61/99 (61%)
Frame = +3
Query: 9 ARGDHYQMSGIEWDPTGRYVVTGVSSLKCKMDCGYYIWSFQGKIIRRVMKEGFAQFHWRP 188
A G+H+ + I WDPTGRY+ + V+S+ +M+ G+ IWSF GK + +V K+ F QF WRP
Sbjct: 553 ATGEHFMATDIMWDPTGRYLASAVTSVH-EMENGFQIWSFSGKQLYKVSKDHFFQFLWRP 611
Query: 189 RPPSLLTXXXXXXXXXXXXXYYSQFESKDRMRSSKASEE 305
RPPSLLT Y ++E +D+ ++ SE+
Sbjct: 612 RPPSLLTPEKEDEIAKNLRKYSKKYEQEDQDAFNQLSEQ 650
>02_04_0544 -
23768808-23768910,23769005-23769030,23769379-23769497,
23769542-23769668,23769842-23769905,23769981-23770095,
23770867-23771101,23771196-23771382,23771948-23772305,
23772432-23772465
Length = 455
Score = 38.3 bits (85), Expect = 0.001
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +3
Query: 42 EWDPTGRYVVTGVSSLKCKMDCGYYIWSFQGKIIRRVMKEGFAQFHWRPRPP 197
EW P GR+ +T ++ + ++D G I+ G + + M E Q W+P P
Sbjct: 288 EWSPDGRHFMTATTAPRLQIDNGIKIFDHNGSLQFKKMFEKLYQADWKPEAP 339
>05_04_0373 + 20732358-20732675,20733555-20734440,20734523-20735625
Length = 768
Score = 31.9 bits (69), Expect = 0.11
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +2
Query: 158 GRFRSVPLAAETAVAVDRKVAEGDQEEPQEVLLAVR 265
GR RS +A +T V R +A+GDQ QEV A R
Sbjct: 246 GRTRSWAVALKTLALVHRLLADGDQAFEQEVFYATR 281
>09_02_0022 +
3065644-3065953,3066048-3067162,3067261-3067437,
3067535-3067648,3068614-3068718,3068930-3069064,
3069148-3069203,3069277-3069382,3069515-3069631,
3069705-3069831,3069915-3070141,3070164-3070727
Length = 1050
Score = 29.5 bits (63), Expect = 0.60
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +3
Query: 12 RGDHYQ-MSGIEWDPTGRYVVTGVSSLKCKMDCGYYIWSFQGK--IIRRVMKEGFAQFHW 182
+G+H Q + + W P GRY+VT +D IW + K + R+ E W
Sbjct: 245 KGEHEQPVCSLCWSPNGRYLVT------AGLDKQVLIWDVKSKQDVERQKFDERICSLAW 298
Query: 183 RP 188
+P
Sbjct: 299 KP 300
>01_06_1557 - 38231826-38233391
Length = 521
Score = 29.1 bits (62), Expect = 0.79
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 158 GRFRSVPLAAETAVAVDRKVAEGDQEEPQEVLLAVR 265
GR R+ +A + V R +A+GD QEV LA R
Sbjct: 81 GRTRAWAVAVKALALVHRLLADGDPAYEQEVFLATR 116
>08_01_0058 +
388989-389102,389226-389337,389457-389483,389787-389859,
389958-390061,390144-390358,390429-390528,390739-390805,
391628-391716,391810-391948,392057-392157,392921-393088,
393302-393510
Length = 505
Score = 28.7 bits (61), Expect = 1.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 21 HYQMSGIEWDPTGRYVVTGVSSLKCKM 101
HY + G+ WDP G+Y+ + S C++
Sbjct: 155 HY-VQGVAWDPLGQYIASLSSDRTCRI 180
>09_06_0046 + 20467240-20467586,20467627-20468116,20468815-20469426
Length = 482
Score = 27.9 bits (59), Expect = 1.8
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +2
Query: 146 KSDEGRFRSVPLAAETAVAVDRKVAEGDQEEPQEVLLAVRVQGSYA 283
K D+ S E A D + AEG++E+ +VLL +R QG+ A
Sbjct: 218 KLDDMADESDRFLGEILAAHDDEKAEGEEEDFVDVLLRLRRQGAAA 263
>02_05_1024 + 33582921-33583309,33583381-33583444
Length = 150
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = -2
Query: 134 PLEGPDVIA---AVHLALERGHSSHHIA 60
P GP V A AV L+ +RGHSS H++
Sbjct: 86 PRAGPTVCAGLTAVELSRQRGHSSSHVS 113
>03_05_0994 + 29541109-29542527
Length = 472
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 182 AAETAVAVDRKVAEGDQEEPQEVLLAVR 265
AA AVAV+ +AE ++ EP+E + R
Sbjct: 149 AAAAAVAVEPPIAEKEEPEPEEAPVVTR 176
>03_01_0082 +
653041-653137,653219-653496,653596-653689,653804-653886,
654027-654247,654395-654533,654628-654710,654824-655036,
655099-655494,655587-655758,656085-656276,656363-656569,
656661-656753,656957-657156,657329-657838,658114-658184,
658322-658963,659057-659207,659425-659665
Length = 1360
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Frame = +3
Query: 102 DCGYYIWSFQGKIIRRVMKEGFAQFHWR-PRPPSLLTXXXXXXXXXXXXXYYSQFESKDR 278
DC IW+ GK+I++ +E + WR PS L + D+
Sbjct: 312 DCSCCIWAMDGKLIKK-FREHIGRGIWRCLYDPSTLLLATAGFDSAIKVHHLYNSSCHDK 370
Query: 279 MRSSKASEEL 308
M S+++
Sbjct: 371 MEDKVVSDDV 380
>06_01_0914 - 7047865-7049223
Length = 452
Score = 25.8 bits (54), Expect = 7.4
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +2
Query: 131 GENH*KSDEGRFRSVPLAAETAVAVDRKVAEGDQEEPQEVL 253
GE +DE RS+ + A A R A G E EVL
Sbjct: 352 GEKEVDADERELRSIAMEEVAAAAARRGAAAGGGESRVEVL 392
>01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965
Length = 675
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 62 LCGDWSVLSQVQDGLRLLHLVLPG 133
+CG+W+ ++ DG R++ L LPG
Sbjct: 55 VCGNWTGVTCSGDGSRVVALRLPG 78
>06_03_0609 + 22710442-22713502,22713596-22713948
Length = 1137
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 68 GDWSVLSQVQDGLRLLHLVLPGEN 139
GDW +S + + RL L+L G N
Sbjct: 451 GDWGFISSLSNCTRLTKLMLDGNN 474
>06_03_0599 + 22632625-22633030,22634733-22636724,22636819-22637171
Length = 916
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 68 GDWSVLSQVQDGLRLLHLVLPGEN 139
GDW +S + + RL L+L G N
Sbjct: 231 GDWGFISSLSNCTRLTKLMLDGNN 254
>06_03_0554 -
22057957-22058014,22058093-22058426,22058446-22058977,
22059211-22059459,22059551-22059563,22059608-22059942
Length = 506
Score = 25.4 bits (53), Expect = 9.7
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Frame = +2
Query: 98 DGLRLLHLVLPGENH*KSDEGRFRS----VPLAAETAVAVDRKVAEGDQEEPQEVLLAVR 265
DG R L PG ++ G RS + AE A D K+ +EP L VR
Sbjct: 150 DGHRALGPPFPGSLDFQTTRGSTRSGSNKASIKAELASEFDEKLESMRAKEPTSCTLTVR 209
Query: 266 VQGSY 280
V ++
Sbjct: 210 VMPTF 214
>03_05_0701 - 26925252-26925578,26929233-26930513
Length = 535
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 164 FRSVPLAA-ETAVAVDRKVAEGDQEEP 241
FR +P A E+A A+D A D+EEP
Sbjct: 185 FRPLPPALHESAAAIDPGAAPDDEEEP 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,868,132
Number of Sequences: 37544
Number of extensions: 164323
Number of successful extensions: 512
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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