Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_I06
(318 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032646-10|CAA21681.1| 725|Caenorhabditis elegans Hypothetical... 63 5e-11
Z66496-3|CAA91279.2| 570|Caenorhabditis elegans Hypothetical pr... 32 0.078
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr... 29 0.96
Z54270-7|CAE48496.1| 492|Caenorhabditis elegans Hypothetical pr... 27 2.2
Z54270-6|CAA91028.1| 572|Caenorhabditis elegans Hypothetical pr... 27 2.2
AF179215-1|AAF67039.1| 492|Caenorhabditis elegans NHR-25 beta p... 27 2.2
AF179214-1|AAF67038.1| 568|Caenorhabditis elegans NHR-25 alpha ... 27 2.2
Z78544-3|CAB01760.1| 395|Caenorhabditis elegans Hypothetical pr... 27 3.9
U21322-6|AAN65314.2| 669|Caenorhabditis elegans Hypothetical pr... 27 3.9
U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical pr... 27 3.9
AC024785-4|AAF60602.3| 466|Caenorhabditis elegans C-type lectin... 27 3.9
AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical ... 26 6.8
AC025726-36|AAL27268.1| 487|Caenorhabditis elegans Hypothetical... 26 6.8
AC025726-35|AAL27267.1| 489|Caenorhabditis elegans Hypothetical... 26 6.8
Z68319-4|CAA92702.1| 884|Caenorhabditis elegans Hypothetical pr... 25 8.9
AJ011523-1|CAB38019.1| 760|Caenorhabditis elegans CHE-2 protein... 25 8.9
AC006635-2|AAK68383.1| 760|Caenorhabditis elegans Abnormal chem... 25 8.9
>AL032646-10|CAA21681.1| 725|Caenorhabditis elegans Hypothetical
protein Y54E2A.11a protein.
Length = 725
Score = 62.9 bits (146), Expect = 5e-11
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Frame = +3
Query: 45 WDPTGRYVVTGVSSL--KCKMDCGYYIWSFQGKIIRRVMKEGFAQFHWRPRPPSLLTXXX 218
WDPTGRY VT S+L + D GY I++FQG+ + R + AQF WRPRPP L+
Sbjct: 565 WDPTGRYFVT-CSTLGGRAGADLGYRIFTFQGRELCRKNLDRLAQFKWRPRPPVKLSEQK 623
Query: 219 XXXXXXXXXXYYSQFESKDRMRSSKASEELVAK 317
++F +D +AS+E+V K
Sbjct: 624 QREIKKNLKKTAAKFIKQDDDEKCRASQEVVEK 656
>Z66496-3|CAA91279.2| 570|Caenorhabditis elegans Hypothetical
protein E04D5.1a protein.
Length = 570
Score = 32.3 bits (70), Expect = 0.078
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +3
Query: 42 EWDPTGRYVVTGVSSLKCKMDCGYYIWSFQGKIIRRVMKEG---FAQFHWRP 188
+W P G++ VT ++ + ++D Y W + G+++ E + WRP
Sbjct: 368 DWAPDGQHFVTCTTAPRLRIDNSYRFWHYTGRMLAETHFESPKELWEVRWRP 419
>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical protein
T01D3.7 protein.
Length = 2882
Score = 28.7 bits (61), Expect = 0.96
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -1
Query: 138 FSPGRTRCNSRSPSCT*ERTLQSPHSVQSDPIRCPTSGN 22
F G N+ S CT RT + H V S IRCP N
Sbjct: 989 FGEGFPITNNNSYICTFGRTSVTGHRVSSALIRCPIPSN 1027
>Z54270-7|CAE48496.1| 492|Caenorhabditis elegans Hypothetical
protein F11C1.6b protein.
Length = 492
Score = 27.5 bits (58), Expect = 2.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 182 PVELSETFLHHSSNDFP 132
P + SE F+HHS +D+P
Sbjct: 159 PFDYSEQFIHHSLHDYP 175
>Z54270-6|CAA91028.1| 572|Caenorhabditis elegans Hypothetical
protein F11C1.6a protein.
Length = 572
Score = 27.5 bits (58), Expect = 2.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 182 PVELSETFLHHSSNDFP 132
P + SE F+HHS +D+P
Sbjct: 239 PFDYSEQFIHHSLHDYP 255
>AF179215-1|AAF67039.1| 492|Caenorhabditis elegans NHR-25 beta
protein.
Length = 492
Score = 27.5 bits (58), Expect = 2.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 182 PVELSETFLHHSSNDFP 132
P + SE F+HHS +D+P
Sbjct: 159 PFDYSEQFIHHSLHDYP 175
>AF179214-1|AAF67038.1| 568|Caenorhabditis elegans NHR-25 alpha
protein.
Length = 568
Score = 27.5 bits (58), Expect = 2.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 182 PVELSETFLHHSSNDFP 132
P + SE F+HHS +D+P
Sbjct: 235 PFDYSEQFIHHSLHDYP 251
>Z78544-3|CAB01760.1| 395|Caenorhabditis elegans Hypothetical
protein K04G11.4 protein.
Length = 395
Score = 26.6 bits (56), Expect = 3.9
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +3
Query: 30 MSGIEWDPTGRYVVTGVSSLKCKMDCGYYIWSFQGKIIRRVM--KEGFAQFHW 182
+SGI++ P GRY+ +G DC IW + +M + G +F W
Sbjct: 110 ISGIKFSPDGRYMGSG------SADCSIKIWRMDFVYEKTLMGHRLGINEFSW 156
>U21322-6|AAN65314.2| 669|Caenorhabditis elegans Hypothetical
protein K10D2.1b protein.
Length = 669
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3
Query: 12 RGDHYQMSGIEWDPTGRYVVTG 77
RG ++ +EW P G+Y+ +G
Sbjct: 130 RGHSMEVLTVEWSPNGKYLASG 151
>U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical
protein K10D2.1a protein.
Length = 1223
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3
Query: 12 RGDHYQMSGIEWDPTGRYVVTG 77
RG ++ +EW P G+Y+ +G
Sbjct: 418 RGHSMEVLTVEWSPNGKYLASG 439
>AC024785-4|AAF60602.3| 466|Caenorhabditis elegans C-type lectin
protein 72 protein.
Length = 466
Score = 26.6 bits (56), Expect = 3.9
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -2
Query: 179 VELSETFLHHSSNDFPLEGPDVIAAVHLALERGHSSHHIASSRIPFDARHLVMVA 15
+E TFLH PL I AV++ + GH S + +P D +L+MV+
Sbjct: 327 IEEDATFLHFIGW-MPLRERYPIYAVNVKVS-GHGSQVLPPMSVPRDVTYLIMVS 379
>AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical
protein F13C5.1 protein.
Length = 437
Score = 25.8 bits (54), Expect = 6.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 247 FLRFFLISFCNFSVNSDGGLGR 182
FL +FL+SF FS++S R
Sbjct: 389 FLSYFLVSFSTFSISSSSSTHR 410
>AC025726-36|AAL27268.1| 487|Caenorhabditis elegans Hypothetical
protein Y71G12B.1b protein.
Length = 487
Score = 25.8 bits (54), Expect = 6.8
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = +3
Query: 33 SGIEWDPTGRYVVT 74
+G+ WDP+G+Y+ T
Sbjct: 179 NGVCWDPSGKYIAT 192
>AC025726-35|AAL27267.1| 489|Caenorhabditis elegans Hypothetical
protein Y71G12B.1a protein.
Length = 489
Score = 25.8 bits (54), Expect = 6.8
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = +3
Query: 33 SGIEWDPTGRYVVT 74
+G+ WDP+G+Y+ T
Sbjct: 181 NGVCWDPSGKYIAT 194
>Z68319-4|CAA92702.1| 884|Caenorhabditis elegans Hypothetical
protein T23G7.4 protein.
Length = 884
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 152 HSSNDFPLEG-PDVIAAVHLALERGHSSHHIAS 57
H +N + L D +A +H ALE+G ++ H A+
Sbjct: 207 HKANLYSLINCVDTLANLHQALEKGENADHFAA 239
>AJ011523-1|CAB38019.1| 760|Caenorhabditis elegans CHE-2 protein
protein.
Length = 760
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 42 EWDPTGRYVVTGVSSLKCKMDCGY 113
+W+PT +VTG LK K+ G+
Sbjct: 193 DWNPTSDLIVTGGEDLKFKVWDGF 216
>AC006635-2|AAK68383.1| 760|Caenorhabditis elegans Abnormal
chemotaxis protein 2 protein.
Length = 760
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 42 EWDPTGRYVVTGVSSLKCKMDCGY 113
+W+PT +VTG LK K+ G+
Sbjct: 193 DWNPTSDLIVTGGEDLKFKVWDGF 216
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,908,707
Number of Sequences: 27780
Number of extensions: 121600
Number of successful extensions: 305
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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