Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_I02
         (268 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    36   0.001
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    27   0.34 
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   0.34 
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    26   0.78 
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    25   1.4  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   1.8  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    25   1.8  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   2.4  
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz...    24   3.1  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    24   4.1  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    24   4.1  
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    23   5.5  
SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr...    23   7.2  
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ...    23   9.6  

>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 35.9 bits (79), Expect = 0.001
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +2

Query: 143 SVCYKCNRTGHFARECTQ 196
           S+CY CN+TGH A ECT+
Sbjct: 36  SICYNCNQTGHKASECTE 53



 Score = 35.5 bits (78), Expect = 0.001
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 149 CYKCNRTGHFAREC-TQGGVGARDAGFNRQREKCF 250
           CYKC R GH AR+C T G       G +R    C+
Sbjct: 85  CYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCY 119



 Score = 33.9 bits (74), Expect = 0.004
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 149 CYKCNRTGHFARECTQGGV 205
           CY C   GH ARECT+G +
Sbjct: 19  CYNCGENGHQARECTKGSI 37



 Score = 30.7 bits (66), Expect = 0.036
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 146 VCYKCNRTGHFARECT 193
           +CYKCN+ GH A  CT
Sbjct: 158 LCYKCNQPGHIAVNCT 173



 Score = 29.9 bits (64), Expect = 0.063
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 137 SSSVCYKCNRTGHFARECTQG 199
           S+  CY C   GH AR+CT G
Sbjct: 114 SNMNCYACGSYGHQARDCTMG 134



 Score = 26.6 bits (56), Expect = 0.59
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 149 CYKCNRTGHFARECTQGGVG 208
           CY C + GH + EC Q   G
Sbjct: 137 CYSCGKIGHRSFECQQASDG 156



 Score = 25.4 bits (53), Expect = 1.4
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +2

Query: 149 CYKCNRTGHFAREC 190
           CY C   GH  R+C
Sbjct: 60  CYACGTAGHLVRDC 73


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 27.5 bits (58), Expect = 0.34
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 143  SVCYKCNRTGHFAREC 190
            S CYKC +  H  REC
Sbjct: 1804 STCYKCGKADHNLREC 1819


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 27.5 bits (58), Expect = 0.34
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 143  SVCYKCNRTGHFAREC 190
            S CYKC +  H  REC
Sbjct: 1804 STCYKCGKADHNLREC 1819


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 26.2 bits (55), Expect = 0.78
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 164 CCTCSIRLNSFSIRCITC 111
           C TC  R+N  SIRC++C
Sbjct: 38  CSTCK-RINKRSIRCLSC 54


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 146 VCYKCNRTGHFAREC 190
           +CY+C + GH+ + C
Sbjct: 184 ICYRCGQKGHWIQAC 198


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 267 PVRFHSKHFSRCRLKPASRAPTPPCVHS 184
           PVR+  +   R +LKP+  AP PP +++
Sbjct: 29  PVRYEVEDDLR-KLKPSRTAPKPPAINT 55



 Score = 22.6 bits (46), Expect = 9.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 240 SRCRLKPASRAPTPPCVHSRAKCPVL 163
           S  RL P+  APTPP   S +  P+L
Sbjct: 247 SSSRLYPSRPAPTPPA--SSSSSPLL 270


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 140 SSVCYKCNRTGHFAREC 190
           S VC+ C   GH +++C
Sbjct: 86  SIVCHNCKGNGHISKDC 102



 Score = 23.0 bits (47), Expect = 7.2
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +2

Query: 149 CYKCNRTGHFARECT 193
           CY C    HF  +CT
Sbjct: 189 CYNCASDEHFGDDCT 203


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 146 VCYKCNRTGHFAREC 190
           VC  C   GH AR+C
Sbjct: 335 VCRHCGSIGHIARDC 349


>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 218

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +2

Query: 149 CYKCNRTGHFARECTQGGVGARDAG 223
           C+ C+  GH + +C Q   G    G
Sbjct: 126 CFICHENGHLSGQCEQNPKGLYPKG 150



 Score = 23.0 bits (47), Expect = 7.2
 Identities = 5/16 (31%), Positives = 10/16 (62%)
 Frame = +2

Query: 149 CYKCNRTGHFARECTQ 196
           C+ C + GH  ++C +
Sbjct: 79  CFACRQQGHIVQDCPE 94



 Score = 23.0 bits (47), Expect = 7.2
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +2

Query: 128 SKMSSSVCYKCNRTGHFARECTQGG 202
           +K + S+C++C    H    C++ G
Sbjct: 95  AKDNVSICFRCGSKEHSLNACSKKG 119


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 267 PVRFHSKHFSRCRLKPASRAPT 202
           PV +HS     CR+ P   APT
Sbjct: 397 PVYYHSLLIECCRIAPKILAPT 418


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 209 RLRHLACTRGRSAPSCCTCSI 147
           RL+ + C+RG+  P C TC++
Sbjct: 11  RLKKIKCSRGQ--PRCQTCTL 29


>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 233

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 185 ECTQGGVGARDAGFNRQREKCFEW 256
           E T GG G  +A  N+ +EK  +W
Sbjct: 167 ELTAGGGGKTEARMNKIKEKNRKW 190


>SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 180

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 115 LVEHLDHYCTDRSTIKYLVK 56
           ++EHL +   D STIK L K
Sbjct: 124 IIEHLHYRIIDVSTIKELAK 143


>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 138 VQAYATSATGRGTSPASARKV 200
           +  YA  ATG GTS  S +K+
Sbjct: 107 ITEYARYATGHGTSGYSIKKL 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 921,993
Number of Sequences: 5004
Number of extensions: 14420
Number of successful extensions: 45
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)