Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_I02
(268 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK054592-1|BAB70769.1| 167|Homo sapiens protein ( Homo sapiens ... 45 4e-05
DQ092367-1|AAY96755.1| 172|Homo sapiens cellular nucleic acid b... 42 5e-04
DQ092366-1|AAY96754.1| 171|Homo sapiens cellular nucleic acid b... 42 5e-04
BC014911-1|AAH14911.1| 170|Homo sapiens CNBP protein protein. 42 5e-04
BC000288-1|AAH00288.1| 170|Homo sapiens CNBP protein protein. 42 5e-04
U19765-1|AAA91782.1| 177|Homo sapiens nucleic acid binding prot... 41 6e-04
M28372-1|AAA61975.1| 177|Homo sapiens SRE-binding protein protein. 41 6e-04
DQ091187-1|AAY89856.1| 178|Homo sapiens cellular nucleic acid b... 41 6e-04
BT019613-1|AAV38419.1| 178|Homo sapiens zinc finger protein 9 (... 41 6e-04
BC093058-1|AAH93058.1| 177|Homo sapiens CCHC-type zinc finger, ... 41 6e-04
AY329622-1|AAR89462.1| 177|Homo sapiens zinc finger protein 9 p... 41 6e-04
BC021176-1|AAH21176.1| 166|Homo sapiens zinc finger, CCHC domai... 38 0.008
AY436367-1|AAR11855.1| 54|Homo sapiens cellular nucleic acid b... 35 0.041
AL832323-1|CAD38618.1| 899|Homo sapiens hypothetical protein pr... 33 0.16
AK000288-1|BAA91057.1| 298|Homo sapiens protein ( Homo sapiens ... 33 0.16
AB051531-1|BAB21835.1| 855|Homo sapiens KIAA1744 protein protein. 33 0.16
U79569-1|AAD00321.1| 269|Homo sapiens no arches protein. 33 0.22
EF191081-1|ABN05292.1| 269|Homo sapiens cleavage and polyadenyl... 33 0.22
CR542161-1|CAG46958.1| 269|Homo sapiens CPSF4 protein. 33 0.22
BC050738-1|AAH50738.1| 243|Homo sapiens CPSF4 protein protein. 33 0.22
BC003101-1|AAH03101.1| 244|Homo sapiens cleavage and polyadenyl... 33 0.22
BC004951-1|AAH04951.1| 359|Homo sapiens RNA binding motif prote... 31 0.66
BC003503-1|AAH03503.1| 359|Homo sapiens RNA binding motif prote... 31 0.66
BC022543-1|AAH22543.1| 217|Homo sapiens zinc finger CCHC-type a... 31 0.87
BC010177-1|AAH10177.1| 140|Homo sapiens ZCRB1 protein protein. 31 0.87
BC005099-1|AAH05099.1| 141|Homo sapiens Unknown (protein for IM... 31 0.87
AB062361-1|BAB56132.1| 217|Homo sapiens ZCRB1 protein protein. 31 0.87
AK091495-1|BAC03676.1| 212|Homo sapiens protein ( Homo sapiens ... 30 1.2
AF480924-1|AAM81186.1| 622|Homo sapiens gag protein protein. 30 1.2
U89505-1|AAC51293.1| 366|Homo sapiens Hlark protein. 29 3.5
BC101478-1|AAI01479.1| 949|Homo sapiens zinc finger, CCHC domai... 29 3.5
BC032735-1|AAH32735.1| 364|Homo sapiens RNA binding motif prote... 29 3.5
BC000307-1|AAH00307.1| 364|Homo sapiens RNA binding motif prote... 29 3.5
AL117532-1|CAB55981.1| 845|Homo sapiens hypothetical protein pr... 29 3.5
AB030243-1|BAB83129.1| 949|Homo sapiens BDG-29 protein. 29 3.5
AB011151-1|BAA25505.2| 910|Homo sapiens KIAA0579 protein protein. 29 3.5
X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related prec... 27 8.1
DQ314873-1|ABC40732.1| 4544|Homo sapiens low density lipoprotein... 27 8.1
AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-re... 27 8.1
AB209498-1|BAD92735.1| 2359|Homo sapiens low density lipoprotein... 27 8.1
>AK054592-1|BAB70769.1| 167|Homo sapiens protein ( Homo sapiens
cDNA FLJ30030 fis, clone 3NB692001339, highly similar to
CELLULAR NUCLEIC ACID BINDING PROTEIN. ).
Length = 167
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Frame = +2
Query: 134 MSSSVCYKCNRTGHFARECTQGGVGARD------AGFNRQREKCFEWNRTG 268
MSS+ C+KC R+GH+AREC GG R GF R+ C+ +G
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRDICYRCGESG 51
Score = 35.1 bits (77), Expect = 0.041
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 128 SKMSSSVCYKCNRTGHFARECT 193
SK S CY+C +GH ARECT
Sbjct: 141 SKTSEVNCYRCGESGHLARECT 162
Score = 29.1 bits (62), Expect = 2.7
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +2
Query: 146 VCYKCNRTGHFAREC 190
+CY+C +GH A++C
Sbjct: 43 ICYRCGESGHLAKDC 57
Score = 29.1 bits (62), Expect = 2.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +2
Query: 134 MSSSVCYKCNRTGHFARECTQ 196
+ CY C R GH A++C +
Sbjct: 59 LQEDACYNCGRGGHIAKDCKE 79
Score = 28.3 bits (60), Expect = 4.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 149 CYKCNRTGHFAREC 190
CY C + GH AR+C
Sbjct: 88 CYNCGKPGHLARDC 101
>DQ092367-1|AAY96755.1| 172|Homo sapiens cellular nucleic acid
binding protein beta variant 2 protein.
Length = 172
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/41 (48%), Positives = 27/41 (65%)
Frame = +2
Query: 134 MSSSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFEW 256
MSS+ C+KC R+GH+AREC G G R G R R + F++
Sbjct: 1 MSSNECFKCGRSGHWARECPTG--GGRGRGM-RSRGRGFQF 38
Score = 35.1 bits (77), Expect = 0.041
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 128 SKMSSSVCYKCNRTGHFARECT 193
SK S CY+C +GH ARECT
Sbjct: 146 SKTSEVNCYRCGESGHLARECT 167
Score = 29.1 bits (62), Expect = 2.7
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +2
Query: 146 VCYKCNRTGHFAREC 190
+CY+C +GH A++C
Sbjct: 46 ICYRCGESGHLAKDC 60
Score = 28.3 bits (60), Expect = 4.7
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQ 196
CY C R GH A++C +
Sbjct: 69 CYNCGRGGHIAKDCKE 84
Score = 28.3 bits (60), Expect = 4.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 149 CYKCNRTGHFAREC 190
CY C + GH AR+C
Sbjct: 93 CYNCGKPGHLARDC 106
>DQ092366-1|AAY96754.1| 171|Homo sapiens cellular nucleic acid
binding protein beta variant 1 protein.
Length = 171
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/41 (48%), Positives = 27/41 (65%)
Frame = +2
Query: 134 MSSSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFEW 256
MSS+ C+KC R+GH+AREC G G R G R R + F++
Sbjct: 1 MSSNECFKCGRSGHWARECPTG--GGRGRGM-RSRGRGFQF 38
Score = 35.1 bits (77), Expect = 0.041
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 128 SKMSSSVCYKCNRTGHFARECT 193
SK S CY+C +GH ARECT
Sbjct: 145 SKTSEVNCYRCGESGHLARECT 166
Score = 29.1 bits (62), Expect = 2.7
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +2
Query: 146 VCYKCNRTGHFAREC 190
+CY+C +GH A++C
Sbjct: 46 ICYRCGESGHLAKDC 60
Score = 28.3 bits (60), Expect = 4.7
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQ 196
CY C R GH A++C +
Sbjct: 68 CYNCGRGGHIAKDCKE 83
Score = 28.3 bits (60), Expect = 4.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 149 CYKCNRTGHFAREC 190
CY C + GH AR+C
Sbjct: 92 CYNCGKPGHLARDC 105
>BC014911-1|AAH14911.1| 170|Homo sapiens CNBP protein protein.
Length = 170
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/41 (48%), Positives = 27/41 (65%)
Frame = +2
Query: 134 MSSSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFEW 256
MSS+ C+KC R+GH+AREC G G R G R R + F++
Sbjct: 1 MSSNECFKCGRSGHWARECPTG--GGRGRGM-RSRGRGFQF 38
Score = 35.1 bits (77), Expect = 0.041
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 128 SKMSSSVCYKCNRTGHFARECT 193
SK S CY+C +GH ARECT
Sbjct: 144 SKTSEVNCYRCGESGHLARECT 165
Score = 29.1 bits (62), Expect = 2.7
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +2
Query: 146 VCYKCNRTGHFAREC 190
+CY+C +GH A++C
Sbjct: 46 ICYRCGESGHLAKDC 60
Score = 29.1 bits (62), Expect = 2.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +2
Query: 134 MSSSVCYKCNRTGHFARECTQ 196
+ CY C R GH A++C +
Sbjct: 62 LQEDACYNCGRGGHIAKDCKE 82
Score = 28.3 bits (60), Expect = 4.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 149 CYKCNRTGHFAREC 190
CY C + GH AR+C
Sbjct: 91 CYNCGKPGHLARDC 104
>BC000288-1|AAH00288.1| 170|Homo sapiens CNBP protein protein.
Length = 170
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/41 (48%), Positives = 27/41 (65%)
Frame = +2
Query: 134 MSSSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFEW 256
MSS+ C+KC R+GH+AREC G G R G R R + F++
Sbjct: 1 MSSNECFKCGRSGHWARECPTG--GGRGRGM-RSRGRGFQF 38
Score = 35.1 bits (77), Expect = 0.041
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 128 SKMSSSVCYKCNRTGHFARECT 193
SK S CY+C +GH ARECT
Sbjct: 144 SKTSEVNCYRCGESGHLARECT 165
Score = 29.1 bits (62), Expect = 2.7
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +2
Query: 146 VCYKCNRTGHFAREC 190
+CY+C +GH A++C
Sbjct: 46 ICYRCGESGHLAKDC 60
Score = 29.1 bits (62), Expect = 2.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +2
Query: 134 MSSSVCYKCNRTGHFARECTQ 196
+ CY C R GH A++C +
Sbjct: 62 LQEDACYNCGRGGHIAKDCKE 82
Score = 28.3 bits (60), Expect = 4.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 149 CYKCNRTGHFAREC 190
CY C + GH AR+C
Sbjct: 91 CYNCGKPGHLARDC 104
>U19765-1|AAA91782.1| 177|Homo sapiens nucleic acid binding protein
protein.
Length = 177
Score = 41.1 bits (92), Expect = 6e-04
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +2
Query: 134 MSSSVCYKCNRTGHFARECTQGG 202
MSS+ C+KC R+GH+AREC GG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGG 23
Score = 35.1 bits (77), Expect = 0.041
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 128 SKMSSSVCYKCNRTGHFARECT 193
SK S CY+C +GH ARECT
Sbjct: 151 SKTSEVNCYRCGESGHLARECT 172
Score = 29.1 bits (62), Expect = 2.7
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +2
Query: 146 VCYKCNRTGHFAREC 190
+CY+C +GH A++C
Sbjct: 53 ICYRCGESGHLAKDC 67
Score = 29.1 bits (62), Expect = 2.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +2
Query: 134 MSSSVCYKCNRTGHFARECTQ 196
+ CY C R GH A++C +
Sbjct: 69 LQEDACYNCGRGGHIAKDCKE 89
Score = 28.3 bits (60), Expect = 4.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 149 CYKCNRTGHFAREC 190
CY C + GH AR+C
Sbjct: 98 CYNCGKPGHLARDC 111
>M28372-1|AAA61975.1| 177|Homo sapiens SRE-binding protein protein.
Length = 177
Score = 41.1 bits (92), Expect = 6e-04
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +2
Query: 134 MSSSVCYKCNRTGHFARECTQGG 202
MSS+ C+KC R+GH+AREC GG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGG 23
Score = 35.1 bits (77), Expect = 0.041
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 128 SKMSSSVCYKCNRTGHFARECT 193
SK S CY+C +GH ARECT
Sbjct: 151 SKTSEVNCYRCGESGHLARECT 172
Score = 29.1 bits (62), Expect = 2.7
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +2
Query: 146 VCYKCNRTGHFAREC 190
+CY+C +GH A++C
Sbjct: 53 ICYRCGESGHLAKDC 67
Score = 29.1 bits (62), Expect = 2.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +2
Query: 134 MSSSVCYKCNRTGHFARECTQ 196
+ CY C R GH A++C +
Sbjct: 69 LQEDACYNCGRGGHIAKDCKE 89
Score = 28.3 bits (60), Expect = 4.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 149 CYKCNRTGHFAREC 190
CY C + GH AR+C
Sbjct: 98 CYNCGKPGHLARDC 111
>DQ091187-1|AAY89856.1| 178|Homo sapiens cellular nucleic acid
binding protein alpha variant 1 protein.
Length = 178
Score = 41.1 bits (92), Expect = 6e-04
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +2
Query: 134 MSSSVCYKCNRTGHFARECTQGG 202
MSS+ C+KC R+GH+AREC GG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGG 23
Score = 35.1 bits (77), Expect = 0.041
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 128 SKMSSSVCYKCNRTGHFARECT 193
SK S CY+C +GH ARECT
Sbjct: 152 SKTSEVNCYRCGESGHLARECT 173
Score = 29.1 bits (62), Expect = 2.7
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +2
Query: 146 VCYKCNRTGHFAREC 190
+CY+C +GH A++C
Sbjct: 53 ICYRCGESGHLAKDC 67
Score = 28.3 bits (60), Expect = 4.7
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQ 196
CY C R GH A++C +
Sbjct: 75 CYNCGRGGHIAKDCKE 90
Score = 28.3 bits (60), Expect = 4.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 149 CYKCNRTGHFAREC 190
CY C + GH AR+C
Sbjct: 99 CYNCGKPGHLARDC 112
>BT019613-1|AAV38419.1| 178|Homo sapiens zinc finger protein 9 (a
cellular retroviral nucleic acid binding protein)
protein.
Length = 178
Score = 41.1 bits (92), Expect = 6e-04
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +2
Query: 134 MSSSVCYKCNRTGHFARECTQGG 202
MSS+ C+KC R+GH+AREC GG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGG 23
Score = 35.1 bits (77), Expect = 0.041
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 128 SKMSSSVCYKCNRTGHFARECT 193
SK S CY+C +GH ARECT
Sbjct: 152 SKTSEVNCYRCGESGHLARECT 173
Score = 29.1 bits (62), Expect = 2.7
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +2
Query: 146 VCYKCNRTGHFAREC 190
+CY+C +GH A++C
Sbjct: 53 ICYRCGESGHLAKDC 67
Score = 28.3 bits (60), Expect = 4.7
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQ 196
CY C R GH A++C +
Sbjct: 75 CYNCGRGGHIAKDCKE 90
Score = 28.3 bits (60), Expect = 4.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 149 CYKCNRTGHFAREC 190
CY C + GH AR+C
Sbjct: 99 CYNCGKPGHLARDC 112
>BC093058-1|AAH93058.1| 177|Homo sapiens CCHC-type zinc finger,
nucleic acid binding protein protein.
Length = 177
Score = 41.1 bits (92), Expect = 6e-04
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +2
Query: 134 MSSSVCYKCNRTGHFARECTQGG 202
MSS+ C+KC R+GH+AREC GG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGG 23
Score = 35.1 bits (77), Expect = 0.041
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 128 SKMSSSVCYKCNRTGHFARECT 193
SK S CY+C +GH ARECT
Sbjct: 151 SKTSEVNCYRCGESGHLARECT 172
Score = 29.1 bits (62), Expect = 2.7
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +2
Query: 146 VCYKCNRTGHFAREC 190
+CY+C +GH A++C
Sbjct: 53 ICYRCGESGHLAKDC 67
Score = 29.1 bits (62), Expect = 2.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +2
Query: 134 MSSSVCYKCNRTGHFARECTQ 196
+ CY C R GH A++C +
Sbjct: 69 LQEDACYNCGRGGHIAKDCKE 89
Score = 28.3 bits (60), Expect = 4.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 149 CYKCNRTGHFAREC 190
CY C + GH AR+C
Sbjct: 98 CYNCGKPGHLARDC 111
>AY329622-1|AAR89462.1| 177|Homo sapiens zinc finger protein 9
protein.
Length = 177
Score = 41.1 bits (92), Expect = 6e-04
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +2
Query: 134 MSSSVCYKCNRTGHFARECTQGG 202
MSS+ C+KC R+GH+AREC GG
Sbjct: 1 MSSNECFKCGRSGHWARECPTGG 23
Score = 35.1 bits (77), Expect = 0.041
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 128 SKMSSSVCYKCNRTGHFARECT 193
SK S CY+C +GH ARECT
Sbjct: 151 SKTSEVNCYRCGESGHLARECT 172
Score = 29.1 bits (62), Expect = 2.7
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +2
Query: 146 VCYKCNRTGHFAREC 190
+CY+C +GH A++C
Sbjct: 53 ICYRCGESGHLAKDC 67
Score = 29.1 bits (62), Expect = 2.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +2
Query: 134 MSSSVCYKCNRTGHFARECTQ 196
+ CY C R GH A++C +
Sbjct: 69 LQEDACYNCGRGGHIAKDCKE 89
Score = 28.3 bits (60), Expect = 4.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 149 CYKCNRTGHFAREC 190
CY C + GH AR+C
Sbjct: 98 CYNCGKPGHLARDC 111
>BC021176-1|AAH21176.1| 166|Homo sapiens zinc finger, CCHC domain
containing 13 protein.
Length = 166
Score = 37.5 bits (83), Expect = 0.008
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 134 MSSSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKC 247
MSS + C +GH+AR C +GG G R G + + +C
Sbjct: 1 MSSKDFFACGHSGHWARGCPRGGAGGRRGGGHGRGSQC 38
Score = 30.7 bits (66), Expect = 0.87
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 143 SVCYKCNRTGHFAREC 190
++CY C R+GH A++C
Sbjct: 65 NICYNCGRSGHIAKDC 80
Score = 29.1 bits (62), Expect = 2.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 149 CYKCNRTGHFAREC 190
CY C R GH AR+C
Sbjct: 91 CYTCGRLGHLARDC 104
>AY436367-1|AAR11855.1| 54|Homo sapiens cellular nucleic acid
binding protein protein.
Length = 54
Score = 35.1 bits (77), Expect = 0.041
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 128 SKMSSSVCYKCNRTGHFARECT 193
SK S CY+C +GH ARECT
Sbjct: 28 SKTSEVNCYRCGESGHLARECT 49
>AL832323-1|CAD38618.1| 899|Homo sapiens hypothetical protein
protein.
Length = 899
Score = 33.1 bits (72), Expect = 0.16
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQGGVGARDAGFNRQR 238
CY C +GH+A++C Q + A G R R
Sbjct: 854 CYNCGVSGHYAQDCKQSSMEANQQGTYRLR 883
>AK000288-1|BAA91057.1| 298|Homo sapiens protein ( Homo sapiens
cDNA FLJ20281 fis, clone HEP03769. ).
Length = 298
Score = 33.1 bits (72), Expect = 0.16
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQGGVGARDAGFNRQR 238
CY C +GH+A++C Q + A G R R
Sbjct: 253 CYNCGVSGHYAQDCKQSSMEANQQGTYRLR 282
>AB051531-1|BAB21835.1| 855|Homo sapiens KIAA1744 protein protein.
Length = 855
Score = 33.1 bits (72), Expect = 0.16
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQGGVGARDAGFNRQR 238
CY C +GH+A++C Q + A G R R
Sbjct: 810 CYNCGVSGHYAQDCKQSSMEANQQGTYRLR 839
>U79569-1|AAD00321.1| 269|Homo sapiens no arches protein.
Length = 269
Score = 32.7 bits (71), Expect = 0.22
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQG 199
CYKC GH+A CT+G
Sbjct: 245 CYKCGEKGHYANRCTKG 261
>EF191081-1|ABN05292.1| 269|Homo sapiens cleavage and
polyadenylation specific factor 4, 30kDa protein.
Length = 269
Score = 32.7 bits (71), Expect = 0.22
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQG 199
CYKC GH+A CT+G
Sbjct: 245 CYKCGEKGHYANRCTKG 261
>CR542161-1|CAG46958.1| 269|Homo sapiens CPSF4 protein.
Length = 269
Score = 32.7 bits (71), Expect = 0.22
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQG 199
CYKC GH+A CT+G
Sbjct: 245 CYKCGEKGHYANRCTKG 261
>BC050738-1|AAH50738.1| 243|Homo sapiens CPSF4 protein protein.
Length = 243
Score = 32.7 bits (71), Expect = 0.22
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQG 199
CYKC GH+A CT+G
Sbjct: 219 CYKCGEKGHYANRCTKG 235
>BC003101-1|AAH03101.1| 244|Homo sapiens cleavage and
polyadenylation specific factor 4, 30kDa protein.
Length = 244
Score = 32.7 bits (71), Expect = 0.22
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQG 199
CYKC GH+A CT+G
Sbjct: 220 CYKCGEKGHYANRCTKG 236
>BC004951-1|AAH04951.1| 359|Homo sapiens RNA binding motif protein
4B protein.
Length = 359
Score = 31.1 bits (67), Expect = 0.66
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 143 SVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFEWNRT 265
S CY+C + GH+++EC G R A F Q + + RT
Sbjct: 160 SGCYRCGKEGHWSKECPVDRTG-RVADFTEQYNEQYGAVRT 199
>BC003503-1|AAH03503.1| 359|Homo sapiens RNA binding motif protein
4B protein.
Length = 359
Score = 31.1 bits (67), Expect = 0.66
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 143 SVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFEWNRT 265
S CY+C + GH+++EC G R A F Q + + RT
Sbjct: 160 SGCYRCGKEGHWSKECPVDRTG-RVADFTEQYNEQYGAVRT 199
>BC022543-1|AAH22543.1| 217|Homo sapiens zinc finger CCHC-type and
RNA binding motif 1 protein.
Length = 217
Score = 30.7 bits (66), Expect = 0.87
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 143 SVCYKCNRTGHFARECTQGGVGARDAGFNRQREK 244
S CY+C +GH + C + +G R+ ++++K
Sbjct: 105 SKCYECGESGHLSYACPKNMLGEREPQKKKEKKK 138
>BC010177-1|AAH10177.1| 140|Homo sapiens ZCRB1 protein protein.
Length = 140
Score = 30.7 bits (66), Expect = 0.87
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 143 SVCYKCNRTGHFARECTQGGVGARDAGFNRQREK 244
S CY+C +GH + C + +G R+ ++++K
Sbjct: 105 SKCYECGESGHLSYACPKNMLGEREPPKKKEKKK 138
>BC005099-1|AAH05099.1| 141|Homo sapiens Unknown (protein for
IMAGE:3609027) protein.
Length = 141
Score = 30.7 bits (66), Expect = 0.87
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 143 SVCYKCNRTGHFARECTQGGVGARDAGFNRQREK 244
S CY+C +GH + C + +G R+ ++++K
Sbjct: 105 SKCYECGESGHLSYACPKNMLGEREPPKKKEKKK 138
>AB062361-1|BAB56132.1| 217|Homo sapiens ZCRB1 protein protein.
Length = 217
Score = 30.7 bits (66), Expect = 0.87
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 143 SVCYKCNRTGHFARECTQGGVGARDAGFNRQREK 244
S CY+C +GH + C + +G R+ ++++K
Sbjct: 105 SKCYECGESGHLSYACPKNMLGEREPPKKKEKKK 138
>AK091495-1|BAC03676.1| 212|Homo sapiens protein ( Homo sapiens
cDNA FLJ34176 fis, clone FCBBF3016178. ).
Length = 212
Score = 30.3 bits (65), Expect = 1.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 149 CYKCNRTGHFARECTQ 196
CY C + GHF +EC Q
Sbjct: 137 CYNCEKPGHFKKECRQ 152
>AF480924-1|AAM81186.1| 622|Homo sapiens gag protein protein.
Length = 622
Score = 30.3 bits (65), Expect = 1.2
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 134 MSSSVCYKCNRTGHFAREC 190
M +C++C R GH REC
Sbjct: 503 MRGRICFRCGREGHLMREC 521
>U89505-1|AAC51293.1| 366|Homo sapiens Hlark protein.
Length = 366
Score = 28.7 bits (61), Expect = 3.5
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 143 SVCYKCNRTGHFAREC 190
S CY+C + GH+++EC
Sbjct: 160 SGCYRCGKEGHWSKEC 175
>BC101478-1|AAI01479.1| 949|Homo sapiens zinc finger, CCHC domain
containing 14 protein.
Length = 949
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 131 KMSSSVCYKCNRTGHFARECTQ 196
K + CY C TGH A++C Q
Sbjct: 902 KSGNLSCYNCGATGHRAQDCKQ 923
>BC032735-1|AAH32735.1| 364|Homo sapiens RNA binding motif protein
4 protein.
Length = 364
Score = 28.7 bits (61), Expect = 3.5
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 143 SVCYKCNRTGHFAREC 190
S CY+C + GH+++EC
Sbjct: 160 SGCYRCGKEGHWSKEC 175
>BC000307-1|AAH00307.1| 364|Homo sapiens RNA binding motif protein
4 protein.
Length = 364
Score = 28.7 bits (61), Expect = 3.5
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 143 SVCYKCNRTGHFAREC 190
S CY+C + GH+++EC
Sbjct: 160 SGCYRCGKEGHWSKEC 175
>AL117532-1|CAB55981.1| 845|Homo sapiens hypothetical protein
protein.
Length = 845
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 131 KMSSSVCYKCNRTGHFARECTQ 196
K + CY C TGH A++C Q
Sbjct: 785 KSGNLSCYNCGATGHRAQDCKQ 806
>AB030243-1|BAB83129.1| 949|Homo sapiens BDG-29 protein.
Length = 949
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 131 KMSSSVCYKCNRTGHFARECTQ 196
K + CY C TGH A++C Q
Sbjct: 902 KSGNLSCYNCGATGHRAQDCKQ 923
>AB011151-1|BAA25505.2| 910|Homo sapiens KIAA0579 protein protein.
Length = 910
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 131 KMSSSVCYKCNRTGHFARECTQ 196
K + CY C TGH A++C Q
Sbjct: 863 KSGNLSCYNCGATGHRAQDCKQ 884
>X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related precursor
(AA -19 to 4525) protein.
Length = 4544
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -3
Query: 191 CTRGRSAPSCCTC 153
CT GR APSC TC
Sbjct: 4365 CTDGRVAPSCLTC 4377
>DQ314873-1|ABC40732.1| 4544|Homo sapiens low density
lipoprotein-related protein 1 (alpha-2-macroglobulin
receptor) protein.
Length = 4544
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -3
Query: 191 CTRGRSAPSCCTC 153
CT GR APSC TC
Sbjct: 4365 CTDGRVAPSCLTC 4377
>AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-related
protein protein.
Length = 4544
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -3
Query: 191 CTRGRSAPSCCTC 153
CT GR APSC TC
Sbjct: 4365 CTDGRVAPSCLTC 4377
>AB209498-1|BAD92735.1| 2359|Homo sapiens low density
lipoprotein-related protein 1 variant protein.
Length = 2359
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -3
Query: 191 CTRGRSAPSCCTC 153
CT GR APSC TC
Sbjct: 2180 CTDGRVAPSCLTC 2192
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,986,696
Number of Sequences: 237096
Number of extensions: 535910
Number of successful extensions: 1789
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 1593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1788
length of database: 76,859,062
effective HSP length: 66
effective length of database: 61,210,726
effective search space used: 1346635972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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