Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_I01
(228 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A10.09c |||High-mobility group non-histone chromatin prote... 29 0.11
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc... 28 0.14
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc... 28 0.14
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 27 0.25
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat... 24 2.4
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 24 2.4
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p... 23 5.4
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy... 23 7.2
SPAC212.01c |||S. pombe specific DUF999 family protein 2|Schizos... 22 9.5
SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 22 9.5
SPBCPT2R1.04c |||S. pombe specific DUF999 protein family 10|Schi... 22 9.5
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 22 9.5
SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein fa... 22 9.5
SPBC1348.01 |||S. pombe specific DUF999 protein family 5|Schizos... 22 9.5
SPAC750.06c |||S. pombe specific DUF999 protein family 4|Schizos... 22 9.5
>SPAC57A10.09c |||High-mobility group non-histone chromatin
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 28.7 bits (61), Expect = 0.11
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +1
Query: 103 PKRPMSAYLLWLNSARDKIKSEHPGLKVTEIV*KAGEIWR 222
PKR MSA++ + R+K+K+++P ++ G+ W+
Sbjct: 16 PKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWK 55
>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 28.3 bits (60), Expect = 0.14
Identities = 10/48 (20%), Positives = 25/48 (52%)
Frame = +1
Query: 79 KEIRMSDKPKRPMSAYLLWLNSARDKIKSEHPGLKVTEIV*KAGEIWR 222
K+ +++ RP +A++L+ + +P + +++ GE+WR
Sbjct: 95 KDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWR 142
>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 28.3 bits (60), Expect = 0.14
Identities = 10/48 (20%), Positives = 25/48 (52%)
Frame = +1
Query: 79 KEIRMSDKPKRPMSAYLLWLNSARDKIKSEHPGLKVTEIV*KAGEIWR 222
K+ +++ RP +A++L+ + +P + +++ GE+WR
Sbjct: 95 KDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWR 142
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 27.5 bits (58), Expect = 0.25
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 73 NCKEIRMSDKPKRPMSAYLLWLNSARDKIKSEHPGLKVTEI 195
N ++ R +PKRP SAY L+ + R +IK E G K ++
Sbjct: 107 NKRKARDPAQPKRPPSAYNLFQKNQRSEIK-ESLGEKSNDV 146
>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 308
Score = 24.2 bits (50), Expect = 2.4
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 28 LSRHCYNSKIVY*DFNCKEIRMSDKPKRPMSAYLLW--LNSARDK 156
L RH Y+ +I Y +EI + + K+P + LL NSA +K
Sbjct: 195 LGRHYYSLRINYKKTELEEIMLLNLHKQPWAHGLLLENFNSAAEK 239
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 24.2 bits (50), Expect = 2.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 88 RMSDKPKRPMSAYLLWLNSARDKIKSE 168
R D PK+ +AY+L LN + + KSE
Sbjct: 215 RHPDMPKQVKNAYILILNVSLEYEKSE 241
>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 226
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 70 FNCKEIRMSDKPKRPMSAYLLWL 138
++CK+ S+K P+S YL++L
Sbjct: 151 YSCKKEESSNKFLCPLSKYLIYL 173
>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 516
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 67 DFNCKEIRMSDKPKRPMS 120
DF C+E+R +P P+S
Sbjct: 135 DFFCRELRPETRPVDPVS 152
>SPAC212.01c |||S. pombe specific DUF999 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 22.2 bits (45), Expect = 9.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 108 LRFIGHSDLFTIKILVNNFTIVAMAGERETSTLPS 4
L + GH L+ + IL F IV ++TLP+
Sbjct: 215 LLYFGHWALYKLVILSLGFKIVTPGDVCVSNTLPT 249
>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 526
Score = 22.2 bits (45), Expect = 9.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 14 VLVSRSPAIATIVKLFTKILIVKRSECPIN 103
+LVS+ A KLF + LI S PI+
Sbjct: 422 LLVSKKKLTAASAKLFLRSLIKSPSSKPIS 451
>SPBCPT2R1.04c |||S. pombe specific DUF999 protein family
10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 280
Score = 22.2 bits (45), Expect = 9.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 108 LRFIGHSDLFTIKILVNNFTIVAMAGERETSTLPS 4
L + GH L+ + IL F IV ++TLP+
Sbjct: 215 LLYFGHWALYKLVILSLGFKIVTPGDVCVSNTLPT 249
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 22.2 bits (45), Expect = 9.5
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +1
Query: 67 DFNCKEIRMSDKPKRPMSAYLLWLNSARDK 156
D N KEI PK P++ + + +DK
Sbjct: 1004 DDNAKEILSRSSPKSPVAWFKRKFKNRKDK 1033
>SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein
family 9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 22.2 bits (45), Expect = 9.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 108 LRFIGHSDLFTIKILVNNFTIVAMAGERETSTLPS 4
L + GH L+ + IL F IV ++TLP+
Sbjct: 204 LLYFGHWALYKLVILSLGFKIVTPGDVCVSNTLPT 238
>SPBC1348.01 |||S. pombe specific DUF999 protein family
5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 22.2 bits (45), Expect = 9.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 108 LRFIGHSDLFTIKILVNNFTIVAMAGERETSTLPS 4
L + GH L+ + IL F IV ++TLP+
Sbjct: 204 LLYFGHWALYKLVILSLGFKIVTPGDVCVSNTLPT 238
>SPAC750.06c |||S. pombe specific DUF999 protein family
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 22.2 bits (45), Expect = 9.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 108 LRFIGHSDLFTIKILVNNFTIVAMAGERETSTLPS 4
L + GH L+ + IL F IV ++TLP+
Sbjct: 215 LLYFGHWALYKLVILSLGFKIVTPGDVCVSNTLPT 249
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 789,171
Number of Sequences: 5004
Number of extensions: 11193
Number of successful extensions: 32
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 55
effective length of database: 2,087,258
effective search space used: 41745160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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