Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_I01
(228 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0261 + 27243898-27243938,27244068-27244157,27244293-272443... 41 1e-04
09_06_0203 + 21555747-21555805,21555862-21555939,21556034-215560... 41 2e-04
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 38 9e-04
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662... 37 0.002
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490... 36 0.006
04_04_0814 + 28266590-28266615,28266780-28266860,28266986-282670... 33 0.043
01_06_0175 + 27229878-27230056,27231102-27231159,27231230-272312... 33 0.043
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217 31 0.100
02_04_0578 + 24020404-24021178,24021320-24021463,24022096-24022355 31 0.17
01_07_0053 + 40772966-40773080,40773484-40773578,40773730-407738... 26 3.7
09_02_0525 - 10217332-10217498,10217537-10217750 25 6.5
07_03_1483 + 26881032-26882035,26882130-26882204,26882324-268828... 25 6.5
06_01_0501 - 3587390-3587528,3587922-3588031,3588122-3588187,358... 25 8.6
>02_05_0261 +
27243898-27243938,27244068-27244157,27244293-27244350,
27244441-27244485,27244778-27244855,27244940-27245041,
27245150-27245173
Length = 145
Score = 41.1 bits (92), Expect = 1e-04
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 79 KEIRMSDKPKRPMSAYLLWLNSARDKIKSEHPGLKVTEIV*K-AGEIWRGM 228
K+ S KPKRP SA+ ++++ R + ++ HP K V K AGE WR M
Sbjct: 25 KKAAASGKPKRPPSAFFVFMSEFRQEYQAAHPDNKSVAAVSKAAGEKWRAM 75
>09_06_0203 +
21555747-21555805,21555862-21555939,21556034-21556091,
21556191-21556235,21556514-21556549,21556855-21556935,
21557016-21557087,21557184-21557195
Length = 146
Score = 40.7 bits (91), Expect = 2e-04
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +1
Query: 97 DKPKRPMSAYLLWLNSARDKIKSEHPGLKVTEIV*KA-GEIWRGM 228
+KPKRP SA+ +++ R K +HP +K ++ KA G+ W+ M
Sbjct: 33 NKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIGKAGGDKWKSM 77
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 38.3 bits (85), Expect = 9e-04
Identities = 17/50 (34%), Positives = 30/50 (60%)
Frame = +1
Query: 79 KEIRMSDKPKRPMSAYLLWLNSARDKIKSEHPGLKVTEIV*KAGEIWRGM 228
K+ + + PKR M+ ++ + + R +K+ +P L TEI K GE+W+ M
Sbjct: 591 KKKKDPNAPKRAMTPFMYFSMAERGNMKNNNPDLPTTEIAKKLGEMWQKM 640
>08_01_0008 -
65366-65497,65588-65759,65846-65972,66058-66140,
66232-66329
Length = 203
Score = 37.1 bits (82), Expect = 0.002
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +1
Query: 100 KPKRPMSAYLLWLNSARDKIKSEHPGLK-VTEIV*KAGEIWRGM 228
K KRP +A+ L+++ R + K+EHP K V+ + + GE W+ M
Sbjct: 91 KGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEGGERWKSM 134
>05_01_0562 +
4907937-4907990,4908890-4909075,4909180-4909285,
4909377-4909513,4909989-4910072,4910157-4910248,
4910358-4910466,4910554-4910640,4910737-4910829,
4911384-4911581,4911659-4911810,4911910-4912060,
4912174-4912272,4912362-4912535,4912680-4912758,
4912858-4912979
Length = 640
Score = 35.5 bits (78), Expect = 0.006
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +1
Query: 79 KEIRMSDKPKRPMSAYLLWLNSARDKIKSEHPGLKVTEIV*KAGEIWRGM 228
K+ + + PKR ++ ++ + + R +K+ +P L TEI K GE W+ M
Sbjct: 550 KKKKDPNAPKRAIAPFMYFSKAERANLKNSNPELATTEIAKKLGERWQKM 599
>04_04_0814 +
28266590-28266615,28266780-28266860,28266986-28267043,
28267143-28267187,28268653-28268721,28268821-28268931,
28269038-28269046
Length = 132
Score = 32.7 bits (71), Expect = 0.043
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 100 KPKRPMSAYLLWLNSARDKIKSEHPGLK-VTEIV*KAGEIWRGM 228
KPKR ++ + +L R + +HP K V + AGE WR M
Sbjct: 24 KPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAM 67
>01_06_0175 +
27229878-27230056,27231102-27231159,27231230-27231274,
27232711-27232791,27232884-27232922
Length = 133
Score = 32.7 bits (71), Expect = 0.043
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 100 KPKRPMSAYLLWLNSARDKIKSEHPGLKVTEIV*KA-GEIWRGM 228
+PK+P +A+ ++ R K E+P +K + V KA GE W M
Sbjct: 48 RPKKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEKWNTM 91
>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
Length = 504
Score = 31.5 bits (68), Expect = 0.100
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 106 KRPMSAYLLWLNSARDKIKSEHPGLKVTEIV*KAGEIWRGM 228
K+P AY+LW ++IK E P E+ G W+ +
Sbjct: 158 KKPCPAYVLWCKDQWNEIKKESPDADFKEVSNALGAKWKAL 198
Score = 31.5 bits (68), Expect = 0.100
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +1
Query: 79 KEIRMSDKPKRPMSAYLLWLNSARDKIKSEHPGLKVTEIV*KAGEIWRGM 228
K+ + KPK+PMSAY ++ R + +E V EI GE W+ M
Sbjct: 277 KKEKDPSKPKQPMSAYFVYTQQRRAALVAEKK--NVPEIGRITGEEWKAM 324
Score = 31.1 bits (67), Expect = 0.13
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +1
Query: 97 DKPKRPMSAYLLWLNSARDKIKSEHPGLKVTEIV*KAGEIWR 222
++PK+P S++LL+ AR ++ E PG+ + + W+
Sbjct: 412 NRPKKPASSFLLFSKEARRQLAEERPGVASSTLTALVSVKWK 453
>02_04_0578 + 24020404-24021178,24021320-24021463,24022096-24022355
Length = 392
Score = 30.7 bits (66), Expect = 0.17
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 76 CKEIRMSDKPKRPMSAYLLWLNSARDKIKSEHPGLK 183
C E+ + P R + LLWL + + S HPG +
Sbjct: 189 CNELGVKAVPSRRCVSLLLWLEERYETVYSRHPGFQ 224
>01_07_0053 +
40772966-40773080,40773484-40773578,40773730-40773843,
40773984-40774088,40774179-40774250,40774293-40774346,
40774507-40774619,40774705-40774839,40774941-40775009,
40775140-40775227,40775327-40775398,40775476-40775576,
40775836-40775953,40776054-40776113,40776206-40776316,
40776499-40776573,40776821-40776854,40777453-40777805,
40778154-40778222,40778526-40778762
Length = 729
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 82 EIRMSDKPKRPMSAYLLWLNSARDKIKSEHPGLKVTEIV*KAGEIW 219
E+ DKP + SARDK+ +++ + + + K GE+W
Sbjct: 670 EMDKPDKPHNFEPEIYMMERSARDKLIADYNTMDIWDFNEKYGELW 715
>09_02_0525 - 10217332-10217498,10217537-10217750
Length = 126
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +1
Query: 34 RHCYNSKIVY*DFNCKEIRMSDKPKRPMSAYLLWLNSARDKIKSEHPGLKVTEIV 198
RH + S I++ D+ CK MS ++ +L + A + S+ G++ E V
Sbjct: 32 RHSWLSMILHDDYGCKPSTMSWTRRKLREKWLSSMAGADTVVTSDGGGVEGMEAV 86
>07_03_1483 +
26881032-26882035,26882130-26882204,26882324-26882861,
26883999-26884895,26885178-26885327,26885459-26885791,
26886501-26886695,26887805-26887918
Length = 1101
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 35 AIATIVKLFTKILIVKRSECPINR 106
A+A++ K +L + RSE PINR
Sbjct: 611 AMASLTKGIRSLLTIARSEFPINR 634
>06_01_0501 -
3587390-3587528,3587922-3588031,3588122-3588187,
3588293-3588410,3588499-3588554,3588647-3588766,
3588937-3589035,3589443-3589490,3589534-3589545,
3590353-3590418,3591412-3591471,3592061-3592162,
3592405-3592426,3592959-3593041,3593166-3593293,
3593775-3593881,3594376-3594845
Length = 601
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 124 YLLWLNSARDKIKSEHPGL 180
++LW+++ R S HPGL
Sbjct: 239 FILWMSTIRTMCLSNHPGL 257
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,080,306
Number of Sequences: 37544
Number of extensions: 69834
Number of successful extensions: 132
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 268085412
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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