Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_I01
(228 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 39 5e-04
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 38 0.001
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 38 0.001
AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical... 37 0.002
AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility... 37 0.002
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 36 0.004
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 36 0.004
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 36 0.004
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 36 0.004
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 36 0.004
Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical pr... 36 0.005
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 36 0.005
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 36 0.005
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 36 0.005
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 36 0.005
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 34 0.016
AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical... 27 1.4
AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical ... 26 4.1
Z78418-4|CAB01698.1| 710|Caenorhabditis elegans Hypothetical pr... 25 7.2
AC006673-5|AAF39919.2| 335|Caenorhabditis elegans Serpentine re... 25 7.2
Z81531-5|CAB04319.1| 1152|Caenorhabditis elegans Hypothetical pr... 25 9.6
U80024-10|AAK18891.1| 297|Caenorhabditis elegans Serpentine rec... 25 9.6
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 38.7 bits (86), Expect = 5e-04
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +1
Query: 73 NCKEIRMSDKPKRPMSAYLLWLNSARDKIKSEHPGLKVTEIV*KAGEIWRGM 228
NCK + S+ KRPM+A+++W R KI P + EI + G WR +
Sbjct: 85 NCK--KSSNHIKRPMNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSL 134
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 37.5 bits (83), Expect = 0.001
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +1
Query: 97 DKPKRPMSAYLLWLNSARDKIKSEHPGLKVTEIV*KAGEIWR 222
D+ KRPM+A+++W R K+ E+P + +EI + G W+
Sbjct: 58 DRVKRPMNAFMVWSRGQRKKMALENPKMHNSEISKRLGTEWK 99
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 37.5 bits (83), Expect = 0.001
Identities = 16/50 (32%), Positives = 31/50 (62%)
Frame = +1
Query: 79 KEIRMSDKPKRPMSAYLLWLNSARDKIKSEHPGLKVTEIV*KAGEIWRGM 228
K+ + ++PKR +AY++W N+ R+ +K + G + ++ KAG W+ M
Sbjct: 553 KKTKDPNEPKRATTAYIIWFNANRNSMKED--GDTLGDVAKKAGAKWKSM 600
>AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical
protein Y48B6A.14 protein.
Length = 95
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1
Query: 103 PKRPMSAYLLWLNSARDKIKSEHPGLKVTEIV*KAGEIW 219
PKR MSA+ W+ R++IK PG+ V ++ AG W
Sbjct: 28 PKRAMSAFFFWMQENRERIKK--PGMGVADVAKAAGVEW 64
>AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility
group protein 1.1 protein.
Length = 95
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1
Query: 103 PKRPMSAYLLWLNSARDKIKSEHPGLKVTEIV*KAGEIW 219
PKR MSA+ W+ R++IK PG+ V ++ AG W
Sbjct: 28 PKRAMSAFFFWMQENRERIKK--PGMGVADVAKAAGVEW 64
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 35.9 bits (79), Expect = 0.004
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 106 KRPMSAYLLWLNSARDKIKSEHPGLKVTEIV*KAGEIWRGM 228
KRPM+A+++W R KI +P + + I G W+GM
Sbjct: 179 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGM 219
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 35.9 bits (79), Expect = 0.004
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 106 KRPMSAYLLWLNSARDKIKSEHPGLKVTEIV*KAGEIWRGM 228
KRPM+A+++W R KI +P + + I G W+GM
Sbjct: 176 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGM 216
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 35.9 bits (79), Expect = 0.004
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 106 KRPMSAYLLWLNSARDKIKSEHPGLKVTEIV*KAGEIWRGM 228
KRPM+A+++W R KI +P + + I G W+GM
Sbjct: 282 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGM 322
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 35.9 bits (79), Expect = 0.004
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 106 KRPMSAYLLWLNSARDKIKSEHPGLKVTEIV*KAGEIWRGM 228
KRPM+A+++W R KI +P + + I G W+GM
Sbjct: 330 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGM 370
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 35.9 bits (79), Expect = 0.004
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 106 KRPMSAYLLWLNSARDKIKSEHPGLKVTEIV*KAGEIWRGM 228
KRPM+A+++W R KI +P + + I G W+GM
Sbjct: 330 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGM 370
>Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical
protein F40E10.2 protein.
Length = 212
Score = 35.5 bits (78), Expect = 0.005
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1
Query: 97 DKPKRPMSAYLLWLNSARDKIKSEHPGLKVTEIV*KAGEIWR 222
D KRPM+A+++W R K+ ++P + +EI + G W+
Sbjct: 46 DHVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWK 87
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 35.5 bits (78), Expect = 0.005
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +1
Query: 103 PKRPMSAYLLWLNSARDKIKSEHPGLKVTEIV*KAGEIWR 222
PKR +SA+ + R +I++ HP KV ++ + G++W+
Sbjct: 134 PKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWK 173
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 35.5 bits (78), Expect = 0.005
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +1
Query: 103 PKRPMSAYLLWLNSARDKIKSEHPGLKVTEIV*KAGEIWR 222
PKR +SA+ + R +I++ HP KV ++ + G++W+
Sbjct: 133 PKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWK 172
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 35.5 bits (78), Expect = 0.005
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +1
Query: 103 PKRPMSAYLLWLNSARDKIKSEHPGLKVTEIV*KAGEIWR 222
PKR +SA+ + R +I++ HP KV ++ + G++W+
Sbjct: 135 PKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWK 174
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 35.5 bits (78), Expect = 0.005
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +1
Query: 103 PKRPMSAYLLWLNSARDKIKSEHPGLKVTEIV*KAGEIWR 222
PKR +SA+ + R +I++ HP KV ++ + G++W+
Sbjct: 135 PKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWK 174
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 33.9 bits (74), Expect = 0.016
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +1
Query: 79 KEIRMSDKPKRPMSAYLLWLNSARDKIKSEHPGLKVTEIV*KAGEIWRGM 228
K+ + + PKR SAY+ W ++R+++K + G V ++ K G W+ M
Sbjct: 548 KKDKDPNAPKRATSAYMQWFLASRNELKED--GDSVADVAKKGGAKWKTM 595
>AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical
protein Y71H2AM.17 protein.
Length = 338
Score = 27.5 bits (58), Expect = 1.4
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +1
Query: 103 PKRPMSAYLLWLNSARDKIKSEHPGLKVTEIV*KAGEIW 219
P+RP+ Y+ + K+++E+P ++ +I G+ W
Sbjct: 26 PERPLQPYMRYSRKMWPKVRAENPEAQLWDIGKMIGKYW 64
>AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical
protein C48E7.6 protein.
Length = 1764
Score = 25.8 bits (54), Expect = 4.1
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +1
Query: 1 ARG*SACFALSRHCYNSKIVY*DFNCKEIRMSDKPKRPMSAYLLWLNSARDKI 159
+RG SACF S H S + D KEI M + P + L WL++ R+++
Sbjct: 1165 SRGGSACFNQS-HLDVSALA--DAVDKEIVMIEIGTEPRAGTLEWLDNERNRV 1214
>Z78418-4|CAB01698.1| 710|Caenorhabditis elegans Hypothetical
protein F25D7.5 protein.
Length = 710
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 210 TCFLNYFCNF*SRMFR 163
TC +NYFC F S FR
Sbjct: 271 TCRINYFCKFFSCDFR 286
>AC006673-5|AAF39919.2| 335|Caenorhabditis elegans Serpentine
receptor, class h protein8 protein.
Length = 335
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 219 PDLTCFLNYFCNF*SRMFRLNFISCAI 139
P + C +F NF S +F+L ++ CA+
Sbjct: 177 PYMWCDNCFFFNFDSTIFKLFYVICAV 203
>Z81531-5|CAB04319.1| 1152|Caenorhabditis elegans Hypothetical protein
F36D3.5 protein.
Length = 1152
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 52 KIVY*DFNCKEIRMSDKPKRPMSAYLLWLNSARD 153
+++Y N K+ RMS K P +++ +W++ D
Sbjct: 906 RMLYKKANGKKYRMSVPQKFPATSFHIWMDERTD 939
>U80024-10|AAK18891.1| 297|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 11 protein.
Length = 297
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 207 CFLNYFCNF*SRMFRLNFI 151
CF +Y+ + S MF LNFI
Sbjct: 178 CFFSYWASDRSAMFALNFI 196
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,386,164
Number of Sequences: 27780
Number of extensions: 63562
Number of successful extensions: 157
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 12,740,198
effective HSP length: 55
effective length of database: 11,212,298
effective search space used: 224245960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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