Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_I01
         (228 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    23   0.48 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   1.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   3.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   4.4  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     20   4.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    19   5.9  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 23.0 bits (47), Expect = 0.48
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 130 LWLNSARDKIKSEHPGLKV 186
           +W  + R K K ++PGL V
Sbjct: 54  IWFQNRRTKWKKQNPGLDV 72


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 1.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 118 SAYLLWLNSARDKIKSEHPGLKV 186
           S YL++ N   +K   EHP  K+
Sbjct: 86  SPYLMYENPDEEKRYQEHPNGKI 108


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 3.4
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = -1

Query: 120 RHRSLRFIGHSDLFTIKILVNNFTIVAMAGERETSTLP 7
           RH   + I   +   +   V  + I ++  ER+T  LP
Sbjct: 495 RHMDKKAIVAGETLRVTCPVAGYPIESIVWERDTRVLP 532


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 19.8 bits (39), Expect = 4.4
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = -1

Query: 126 VGRHRSLRFIGHSDLFTIKILVNNFTIVAMAGE 28
           VG+HR L+   + D+F +     +  +  ++ E
Sbjct: 406 VGQHRILKGPANPDIFRVSCATEHSQLTNISEE 438


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 19.8 bits (39), Expect = 4.4
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = -1

Query: 126 VGRHRSLRFIGHSDLFTIKILVNNFTIVAMAGE 28
           VG+HR L+   + D+F +     +  +  ++ E
Sbjct: 112 VGQHRILKGPANPDIFRVSCATEHSQLTNISEE 144


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 19.4 bits (38), Expect = 5.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 157 IKSEHPGLKVTEIV 198
           I ++ PGL+ TE+V
Sbjct: 346 IAADRPGLRNTELV 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,868
Number of Sequences: 438
Number of extensions: 856
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3659655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)