Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_H23
         (315 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0418 - 3059575-3061279,3061915-3061973,3064270-3064353,306...    29   0.77 
01_07_0076 + 40914237-40914315,40914415-40914677                       27   3.1  
07_01_0330 + 2319014-2319532                                           26   7.1  
02_05_0670 - 30764007-30764135,30764404-30764548,30765200-307653...    26   7.1  
07_03_0051 - 12831167-12832188,12832245-12832512                       25   9.4  
05_06_0235 - 26609049-26609468,26610068-26610343,26611579-266117...    25   9.4  
02_05_0263 - 27257150-27259213                                         25   9.4  

>02_01_0418 -
           3059575-3061279,3061915-3061973,3064270-3064353,
           3064395-3064559
          Length = 670

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 86  VLDTSIVSLY*TCHANKSKISSTDTIIGDNYWLRVRYQDTLLQ 214
           + + S   +  T HA KS  + T   IG+N+W  V  QD  ++
Sbjct: 356 ITENSFSDIAKTLHAFKSSRNLTTLFIGENFWGEVIPQDETIE 398


>01_07_0076 + 40914237-40914315,40914415-40914677
          Length = 113

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 72  QNKKRAYGHCSVVCYHERYTKSSC 1
           + K R   +C+++C HE YT   C
Sbjct: 41  RGKCRGNRNCAMICVHEEYTGGYC 64


>07_01_0330 + 2319014-2319532
          Length = 172

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 7/31 (22%), Positives = 22/31 (70%)
 Frame = +1

Query: 64  LILAMVVCIGHVHSKSLLNLSCKQIKDFVNG 156
           ++  +++    ++ KSLL+++C+++ D ++G
Sbjct: 108 VLFKLILAANFLNIKSLLDMTCQRVADMMSG 138


>02_05_0670 -
           30764007-30764135,30764404-30764548,30765200-30765309,
           30765578-30765761,30765857-30765969,30766242-30766412,
           30766493-30766756,30767537-30767782
          Length = 453

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 82  VCIG-HVHSKSLLNLSCKQIKDFVNGHNY 165
           VC G  +H   L+   C +++DF+  HN+
Sbjct: 327 VCTGVMMHGYGLVKKLCAELQDFMRQHNF 355


>07_03_0051 - 12831167-12832188,12832245-12832512
          Length = 429

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 232 PYISFQLQQGVLIPDP*PVIVSYNCVR*RNL*FVCMTSLVETYY 101
           P +  +L +   +PDP  +I SY  +    +   C T+ V+T Y
Sbjct: 56  PELKEKLTRLCTVPDPNLIICSYKYIYSTIIELACKTTTVKTRY 99


>05_06_0235 -
           26609049-26609468,26610068-26610343,26611579-26611746,
           26611850-26611945
          Length = 319

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +2

Query: 122 CHANKSKISSTDTIIGDNYWLRVRY-QDTLLQLEGNIWCGMKN*QLKQRNGQRRIRTSIT 298
           C  + + I +       ++WL V   ++  L  EG +WCG+   +++   G   + +S  
Sbjct: 45  CRTSPNGIKAIGVFRLVHWWLDVLLAEEARLSWEGGLWCGVDE-EVEAACGDGVVSSSNE 103

Query: 299 RAGLW 313
              LW
Sbjct: 104 MQELW 108


>02_05_0263 - 27257150-27259213
          Length = 687

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 83  YVLDTSIVSLY*TCHANKSKISS 151
           Y+L+T IV+LY  C A +S +++
Sbjct: 168 YILETCIVNLYTRCGAYQSAVAT 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,505,465
Number of Sequences: 37544
Number of extensions: 158124
Number of successful extensions: 303
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)