Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_H23
         (315 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70307-5|CAA94331.1|  209|Caenorhabditis elegans Hypothetical pr...    29   0.53 
Z77659-1|CAB01164.1|  401|Caenorhabditis elegans Hypothetical pr...    28   1.6  
U32305-20|AAK18863.1|  796|Caenorhabditis elegans Worm armadillo...    26   5.0  
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    26   5.0  
AF013951-1|AAC47748.1|  796|Caenorhabditis elegans wrm-1 protein.      26   5.0  
U80837-6|AAB37906.1|  172|Caenorhabditis elegans Hypothetical pr...    26   6.6  
AF038615-2|AAB94145.1|  782|Caenorhabditis elegans Hypothetical ...    25   8.7  

>Z70307-5|CAA94331.1|  209|Caenorhabditis elegans Hypothetical
           protein C39E9.5 protein.
          Length = 209

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
 Frame = +1

Query: 52  VRALLILAMVVCIGHVHSKSLLNLSCKQIKDFVNGHNYRRQLLAKGQV----SGHPAATG 219
           ++  L+LA+V C+G  H++   +   KQ    VN HN  R  +AKG+     +   +AT 
Sbjct: 1   MQTALVLALV-CVG-AHAQ--FSEGGKQ--SMVNAHNAVRSSIAKGEYVAKGTKKDSATN 54

Query: 220 RKYMVWDEELXXXXXXXXXQNKNFHNPGRTLG 315
              M WD  L              H+P ++ G
Sbjct: 55  MLKMKWDNSLAQSAQNYANGCPMQHSPDKSYG 86


>Z77659-1|CAB01164.1|  401|Caenorhabditis elegans Hypothetical
           protein F23B12.1 protein.
          Length = 401

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 197 DT*PLASNCLL*LCPLTKSLICLHDKFSRDLL 102
           D   LA NC+     ++K +IC+H   S DL+
Sbjct: 217 DAFQLAFNCMPLCAVVSKKIICMHGGISEDLI 248


>U32305-20|AAK18863.1|  796|Caenorhabditis elegans Worm armadillo
           protein 1 protein.
          Length = 796

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 115 LNLSCKQIKDFVNGHNYRRQLLAKGQVSGHPAATGRKYMVWDEEL 249
           +N    +  +FVN   Y+R L    QVS +   T R+Y +   E+
Sbjct: 129 VNTEMGEFNNFVNQAPYQRALTRVSQVSENQDPTNRQYPMTAPEI 173


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 182 ASNCLL*LCPLTKSLIC 132
           +SNC+L L PL  SL+C
Sbjct: 134 SSNCVLLLAPLINSLVC 150


>AF013951-1|AAC47748.1|  796|Caenorhabditis elegans wrm-1 protein.
          Length = 796

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 115 LNLSCKQIKDFVNGHNYRRQLLAKGQVSGHPAATGRKYMVWDEEL 249
           +N    +  +FVN   Y+R L    QVS +   T R+Y +   E+
Sbjct: 129 VNTEMGEFNNFVNQAPYQRALTRVSQVSENQDPTNRQYPMTAPEI 173


>U80837-6|AAB37906.1|  172|Caenorhabditis elegans Hypothetical
           protein F07E5.7 protein.
          Length = 172

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 155 DTIIGDNYWLRVRYQDTLLQLEG 223
           DT  G+ YW   +Y D L+ L G
Sbjct: 123 DTFNGNFYWTMTKYPDGLIDLGG 145


>AF038615-2|AAB94145.1|  782|Caenorhabditis elegans Hypothetical
           protein R02D3.4 protein.
          Length = 782

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 191 RYQDTLLQLEGNIWCGMKN*QLKQR 265
           R  D L + E   W G+KN  LK+R
Sbjct: 465 RMDDNLTEKETEKWTGLKNSDLKKR 489


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,195,697
Number of Sequences: 27780
Number of extensions: 131724
Number of successful extensions: 281
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)