Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_H22
         (320 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0106 - 13460882-13462086,13463452-13463629                       28   1.9  
01_06_0373 - 28841462-28842850                                         28   1.9  
06_03_0400 - 20420257-20421837                                         27   4.3  
08_01_0527 + 4580599-4580818,4580933-4581806,4581891-4581955,458...    26   5.7  

>07_03_0106 - 13460882-13462086,13463452-13463629
          Length = 460

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 113 HQLWVVQSPPADRAVRLSREPLEPGPPIQR 24
           H+L V+   PA R  R +  PL P P   R
Sbjct: 127 HRLRVIDGDPAPRLARTTAAPLSPDPAFLR 156


>01_06_0373 - 28841462-28842850
          Length = 462

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 107 LWVVQSPPADRAVRLSREPLEP 42
           LWVV+SPP+D   +   +P EP
Sbjct: 286 LWVVRSPPSDDPAKKFDKPPEP 307


>06_03_0400 - 20420257-20421837
          Length = 526

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 149 PSRRGMKSGIEYHQLWVVQSPPADRAVRLSRE 54
           P R+GM   I+Y   W  +  PA+  ++  R+
Sbjct: 414 PHRKGMLYNIQYITFWFGEGAPAEAPIKWIRD 445


>08_01_0527 +
           4580599-4580818,4580933-4581806,4581891-4581955,
           4582055-4582110,4582955-4583058,4583310-4583382,
           4583474-4583654,4584537-4584622
          Length = 552

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 92  SPPADRAVRLSREPLEPGPPIQRESTGN 9
           SPP  R    S EP +  PP++R++ G+
Sbjct: 295 SPPRRRTRHDSHEPKDKLPPLKRQALGD 322


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,744,921
Number of Sequences: 37544
Number of extensions: 126157
Number of successful extensions: 330
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)