Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_H22
(320 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF241364-1|AAF98386.1| 507|Drosophila melanogaster cleavage and... 29 1.8
AE013599-1901|AAF58240.1| 1455|Drosophila melanogaster CG10110-P... 29 1.8
BT023501-1|AAY84901.1| 919|Drosophila melanogaster LD27033p pro... 28 3.1
AF145646-1|AAD38621.1| 418|Drosophila melanogaster BcDNA.GH0792... 28 3.1
AE014296-1769|AAN11939.1| 919|Drosophila melanogaster CG8108-PB... 28 3.1
AE014296-1768|AAF50193.1| 919|Drosophila melanogaster CG8108-PA... 28 3.1
BT003581-1|AAO39585.1| 946|Drosophila melanogaster LD17329p pro... 27 5.4
AY089542-1|AAL90280.1| 613|Drosophila melanogaster LD19191p pro... 27 5.4
AY058718-1|AAL13947.1| 423|Drosophila melanogaster LD45950p pro... 27 5.4
AF426831-1|AAL28078.1| 613|Drosophila melanogaster AFX protein. 27 5.4
AE014297-1790|AAS65148.1| 613|Drosophila melanogaster CG3143-PC... 27 5.4
AE014297-1789|AAS65147.1| 613|Drosophila melanogaster CG3143-PB... 27 5.4
AE014297-1788|AAF55012.2| 798|Drosophila melanogaster CG3143-PA... 27 5.4
AE014297-767|AAF54252.3| 1399|Drosophila melanogaster CG31258-PA... 27 5.4
>AF241364-1|AAF98386.1| 507|Drosophila melanogaster cleavage and
polyadenylation specificityfactor protein.
Length = 507
Score = 28.7 bits (61), Expect = 1.8
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +3
Query: 96 YNPQLMILYS*LHSTTGRTLTPVETTTTIRIILLKNLS*FPIYWPCSRST*SLHFNL*MI 275
Y P L+ILY + + GR +T + I L PI W + SL F+ +
Sbjct: 224 YEPTLLILYEPVRTCPGRIKVRSDTCVLVAISLNIQQRVHPIIWTVN----SLPFDCLQV 279
Query: 276 YP 281
YP
Sbjct: 280 YP 281
>AE013599-1901|AAF58240.1| 1455|Drosophila melanogaster CG10110-PA,
isoform A protein.
Length = 1455
Score = 28.7 bits (61), Expect = 1.8
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +3
Query: 96 YNPQLMILYS*LHSTTGRTLTPVETTTTIRIILLKNLS*FPIYWPCSRST*SLHFNL*MI 275
Y P L+ILY + + GR +T + I L PI W + SL F+ +
Sbjct: 224 YEPTLLILYEPVRTCPGRIKVRSDTCVLVAISLNIQQRVHPIIWTVN----SLPFDCLQV 279
Query: 276 YP 281
YP
Sbjct: 280 YP 281
>BT023501-1|AAY84901.1| 919|Drosophila melanogaster LD27033p
protein.
Length = 919
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 242 RARTRPIYRELAQVLQQNNSNRCCRLHRSQCPSRRGMKSGIEYHQ 108
RAR R RE+ + ++ + +R CRL R + + E+H+
Sbjct: 517 RARQRTTQREIEENSKEEHESRYCRLCRLAYRQPKNLHQASEHHK 561
>AF145646-1|AAD38621.1| 418|Drosophila melanogaster BcDNA.GH07921
protein.
Length = 418
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 242 RARTRPIYRELAQVLQQNNSNRCCRLHRSQCPSRRGMKSGIEYHQ 108
RAR R RE+ + ++ + +R CRL R + + E+H+
Sbjct: 16 RARQRTTQREIEENSKEEHESRYCRLCRLAYRQPKNLHQASEHHK 60
>AE014296-1769|AAN11939.1| 919|Drosophila melanogaster CG8108-PB,
isoform B protein.
Length = 919
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 242 RARTRPIYRELAQVLQQNNSNRCCRLHRSQCPSRRGMKSGIEYHQ 108
RAR R RE+ + ++ + +R CRL R + + E+H+
Sbjct: 517 RARQRTTQREIEENSKEEHESRYCRLCRLAYRQPKNLHQASEHHK 561
>AE014296-1768|AAF50193.1| 919|Drosophila melanogaster CG8108-PA,
isoform A protein.
Length = 919
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 242 RARTRPIYRELAQVLQQNNSNRCCRLHRSQCPSRRGMKSGIEYHQ 108
RAR R RE+ + ++ + +R CRL R + + E+H+
Sbjct: 517 RARQRTTQREIEENSKEEHESRYCRLCRLAYRQPKNLHQASEHHK 561
>BT003581-1|AAO39585.1| 946|Drosophila melanogaster LD17329p
protein.
Length = 946
Score = 27.1 bits (57), Expect = 5.4
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -1
Query: 158 SQCPSRRGMKSGIEYHQLWVVQSPPADRAVRLSREPLEPGPPIQRESTGNPR 3
S P K + + V PA++ + LS+EP EP P+Q + T R
Sbjct: 175 SSTPCTEKQKEEVAKNTTRVETDKPAEKPMELSQEP-EPENPLQTKVTSPAR 225
>AY089542-1|AAL90280.1| 613|Drosophila melanogaster LD19191p
protein.
Length = 613
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 206 QVLQQNNSNRCCRLHRSQCPSRRGMKSGIEYHQLWVVQSPPA 81
Q+L NN+N L + + + + ++Y Q VV SPP+
Sbjct: 569 QLLLNNNNNSSSSLELATQTATTNLNARVQYSQPSVVTSPPS 610
>AY058718-1|AAL13947.1| 423|Drosophila melanogaster LD45950p
protein.
Length = 423
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 206 QVLQQNNSNRCCRLHRSQCPSRRGMKSGIEYHQLWVVQSPPA 81
Q+L NN+N L + + + + ++Y Q VV SPP+
Sbjct: 379 QLLLNNNNNSSSSLELATQTATTNLNARVQYSQPSVVTSPPS 420
>AF426831-1|AAL28078.1| 613|Drosophila melanogaster AFX protein.
Length = 613
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 206 QVLQQNNSNRCCRLHRSQCPSRRGMKSGIEYHQLWVVQSPPA 81
Q+L NN+N L + + + + ++Y Q VV SPP+
Sbjct: 569 QLLLNNNNNSSSSLELATQTATTNLNARVQYSQPSVVTSPPS 610
>AE014297-1790|AAS65148.1| 613|Drosophila melanogaster CG3143-PC,
isoform C protein.
Length = 613
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 206 QVLQQNNSNRCCRLHRSQCPSRRGMKSGIEYHQLWVVQSPPA 81
Q+L NN+N L + + + + ++Y Q VV SPP+
Sbjct: 569 QLLLNNNNNSSSSLELATQTATTNLNARVQYSQPSVVTSPPS 610
>AE014297-1789|AAS65147.1| 613|Drosophila melanogaster CG3143-PB,
isoform B protein.
Length = 613
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 206 QVLQQNNSNRCCRLHRSQCPSRRGMKSGIEYHQLWVVQSPPA 81
Q+L NN+N L + + + + ++Y Q VV SPP+
Sbjct: 569 QLLLNNNNNSSSSLELATQTATTNLNARVQYSQPSVVTSPPS 610
>AE014297-1788|AAF55012.2| 798|Drosophila melanogaster CG3143-PA,
isoform A protein.
Length = 798
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 206 QVLQQNNSNRCCRLHRSQCPSRRGMKSGIEYHQLWVVQSPPA 81
Q+L NN+N L + + + + ++Y Q VV SPP+
Sbjct: 754 QLLLNNNNNSSSSLELATQTATTNLNARVQYSQPSVVTSPPS 795
>AE014297-767|AAF54252.3| 1399|Drosophila melanogaster CG31258-PA
protein.
Length = 1399
Score = 27.1 bits (57), Expect = 5.4
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -1
Query: 158 SQCPSRRGMKSGIEYHQLWVVQSPPADRAVRLSREPLEPGPPIQRESTGNPR 3
S P K + + V PA++ + LS+EP EP P+Q + T R
Sbjct: 175 SSTPCTEKQKEEVAKNTTRVETDKPAEKPMELSQEP-EPENPLQTKVTSPAR 225
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,746,884
Number of Sequences: 53049
Number of extensions: 210959
Number of successful extensions: 651
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 674007744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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