Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_H21
         (200 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   1.4  
SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    23   5.5  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    23   5.5  
SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    23   5.5  
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    23   7.3  
SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar...    22   9.7  

>SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 69

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 22  PRYISIXLNYYCNNIFYFSGLFILDLGTYSL*K 120
           P  +S  +NY C+N FY S      L +Y + K
Sbjct: 19  PIVVSFLINYTCDNKFYSSPSTFALLSSYLIEK 51


>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -3

Query: 192 RLIYLSTHKKK 160
           RLIY+S HKKK
Sbjct: 196 RLIYVSQHKKK 206


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = +2

Query: 113 YKNYNILYTSCDFLNHFFLCV 175
           ++N+   +  C +LN + +CV
Sbjct: 136 FRNHKFFFLECFYLNLYSICV 156


>SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 100

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 110 HYKNYNILYTSCDF 151
           +Y N NI++TSC F
Sbjct: 69  NYVNLNIIFTSCIF 82


>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 158 G*GNHRKYIIYYNFYN 111
           G G+H K+I +YN +N
Sbjct: 383 GAGSHDKHIRFYNCFN 398


>SPBC800.06 |brx1||ribosome biogenesis protein
           Brx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 49  YYCNNIFYF 75
           Y CNNIF+F
Sbjct: 93  YNCNNIFFF 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 598,506
Number of Sequences: 5004
Number of extensions: 7059
Number of successful extensions: 22
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 46
effective length of database: 2,132,294
effective search space used: 42645880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)