Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_H20
(436 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy... 218 3e-58
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac... 218 3e-58
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo... 46 3e-06
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 1.2
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos... 26 2.9
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 25 3.8
SPCC4G3.06c |mrpl4||mitochondrial ribosomal protein subunit L4|S... 25 5.0
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer... 24 8.8
>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 218 bits (532), Expect = 3e-58
Identities = 100/134 (74%), Positives = 116/134 (86%)
Frame = +1
Query: 34 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 213
MGKP G+ ARK NHRRE+RWAD +KK +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1 MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60
Query: 214 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGRKGHAVGDIPGVRF 393
QPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEV ++GFGRKG A GDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRF 120
Query: 394 EVVKVANVSLLALY 435
+VVKVA V L AL+
Sbjct: 121 KVVKVAGVGLSALF 134
>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 218 bits (532), Expect = 3e-58
Identities = 100/134 (74%), Positives = 116/134 (86%)
Frame = +1
Query: 34 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 213
MGKP G+ ARK NHRRE+RWAD +KK +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1 MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60
Query: 214 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGRKGHAVGDIPGVRF 393
QPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEV ++GFGRKG A GDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRF 120
Query: 394 EVVKVANVSLLALY 435
+VVKVA V L AL+
Sbjct: 121 KVVKVAGVGLSALF 134
>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
S12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 46.0 bits (104), Expect = 3e-06
Identities = 30/82 (36%), Positives = 48/82 (58%)
Frame = +1
Query: 160 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*V 339
G+ +G+ V+ K+PNSA+RK RV+L G+ VTA++P G ++ +E+ V +
Sbjct: 47 GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLL 103
Query: 340 AGFGRKGHAVGDIPGVRFEVVK 405
G GR D PGV++ VV+
Sbjct: 104 RG-GR----AQDCPGVQYHVVR 120
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 27.1 bits (57), Expect = 1.2
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -3
Query: 419 DTFATLTTSNLTPGMSPTAWP 357
DT+AT T N PT WP
Sbjct: 1157 DTYATFQTLNYIQNQQPTKWP 1177
>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 25.8 bits (54), Expect = 2.9
Identities = 15/61 (24%), Positives = 26/61 (42%)
Frame = -2
Query: 210 GFNANFFEDDALSMRCTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPRFTHY 31
GF +++ + R E +RLP G + +V L T + L++ P + H
Sbjct: 350 GFKPSYYTNLNRIARYPIENIRLPITLVYGSNDNMVDIETLKTQLPPLSQCIQIPNYEHL 409
Query: 30 D 28
D
Sbjct: 410 D 410
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 25.4 bits (53), Expect = 3.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 417 HVCYLNHLKSDSRNVTNSVAFTTESCNSHLIV 322
HV +LNH+ N N +A + E S LIV
Sbjct: 47 HVDFLNHIHLLLGNYNNDLASSIEKKKSELIV 78
>SPCC4G3.06c |mrpl4||mitochondrial ribosomal protein subunit
L4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 144
Score = 25.0 bits (52), Expect = 5.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 62 AVRIPRGLPITIARTRSAPR 3
AVRIP+G + + +SAP+
Sbjct: 12 AVRIPKGFVFPVPKVKSAPK 31
>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 24.2 bits (50), Expect = 8.8
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = +1
Query: 97 WADKEFKKAHMGTRWKANPFGGASHAKGIV 186
W D EF H ++ PF +H K V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,897,087
Number of Sequences: 5004
Number of extensions: 38954
Number of successful extensions: 104
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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