Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_H20
(436 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 223 5e-59
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 222 1e-58
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 150 4e-37
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 50 1e-06
12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192 31 0.54
06_02_0197 - 12912818-12913411,12913505-12913732 30 0.94
05_04_0148 - 18426903-18427106,18430516-18430594,18430752-184309... 29 1.2
11_04_0425 - 17522818-17522822,17522860-17522971,17523267-17523584 29 1.6
02_02_0401 + 9847398-9847463,9848916-9849019,9849873-9849876,984... 29 2.2
12_01_0986 - 10009518-10009839,10009958-10011544,10012515-10013311 27 5.0
09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293 27 5.0
10_01_0086 - 1064650-1065379,1065796-1065950,1066029-1066141,106... 27 6.6
06_01_0267 - 1972988-1973148,1973275-1973403,1973881-1974024,197... 27 8.7
04_02_0034 - 8999618-9000358,9001439-9001618,9001666-9003621,900... 27 8.7
03_06_0741 + 35893538-35895600,35896274-35896474,35896701-358968... 27 8.7
02_01_0335 + 2386902-2386906,2386976-2387282,2387664-2387777,239... 27 8.7
02_01_0125 + 920128-920392,920491-921839,921921-922084,922340-92... 27 8.7
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310... 27 8.7
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 223 bits (545), Expect = 5e-59
Identities = 102/140 (72%), Positives = 117/140 (83%)
Frame = +1
Query: 16 RVRAIVMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEK 195
R ++ MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK
Sbjct: 165 RCPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEK 223
Query: 196 VGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGRKGHAVGD 375
+G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEV +AGFGRKGHAVGD
Sbjct: 224 IGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGD 283
Query: 376 IPGVRFEVVKVANVSLLALY 435
IPGVRF+VVKV+ VSLLAL+
Sbjct: 284 IPGVRFKVVKVSGVSLLALF 303
Score = 222 bits (542), Expect = 1e-58
Identities = 101/134 (75%), Positives = 114/134 (85%)
Frame = +1
Query: 34 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 213
MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 214 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGRKGHAVGDIPGVRF 393
QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEV +AGFGRKGHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 394 EVVKVANVSLLALY 435
+VVKV+ VSLLAL+
Sbjct: 120 KVVKVSGVSLLALF 133
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 222 bits (542), Expect = 1e-58
Identities = 101/134 (75%), Positives = 114/134 (85%)
Frame = +1
Query: 34 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 213
MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 214 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGRKGHAVGDIPGVRF 393
QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEV +AGFGRKGHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 394 EVVKVANVSLLALY 435
+VVKV+ VSLLAL+
Sbjct: 120 KVVKVSGVSLLALF 133
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 150 bits (364), Expect = 4e-37
Identities = 72/112 (64%), Positives = 83/112 (74%), Gaps = 1/112 (0%)
Frame = +1
Query: 13 DRVRAIVMG-KPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVL 189
+RVRA G K G+ RK HRR QRWADK +KK+H G WK PF G+SHAKGIVL
Sbjct: 64 ERVRAWSCGAKTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVL 122
Query: 190 EKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAG 345
EK+G+EAKQPNSAI KC RVQL+KNGKK+ AFVP DGCLN I+EN+ V G
Sbjct: 123 EKIGIEAKQPNSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDG 174
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 49.6 bits (113), Expect = 1e-06
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +1
Query: 325 DEV*VAGFGRKGHAVGDIPGVRFEVVK 405
DEV ++GFG KGHAVGDI GVRFEVVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192
Length = 283
Score = 30.7 bits (66), Expect = 0.54
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 12 RSCSRYRNG*TSGYSHGAQARESSSRAAMGRQGIQKSP 125
R+C R +G +GY HG + + SSR + R G+ +P
Sbjct: 184 RACYRV-HGMATGYCHGCRCQRCSSRPSRDRDGVAWAP 220
>06_02_0197 - 12912818-12913411,12913505-12913732
Length = 273
Score = 29.9 bits (64), Expect = 0.94
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -1
Query: 250 VHEHTYEWLNSAAWLQRQLFRGRCP*HEMHHRR 152
V +H WL +A+ LQR +FR H++HH+R
Sbjct: 186 VDDHCGLWLPAASPLQR-VFRNNAAYHDVHHQR 217
>05_04_0148 -
18426903-18427106,18430516-18430594,18430752-18430935,
18431020-18431063,18432028-18432165,18432713-18434511
Length = 815
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -3
Query: 410 ATLTTSNLTP-GMSPTAWPLRPNPATHTSSFSSMWLRQPSRGTNAVTFLPFLMSCTRT 240
+T T+S+ P SP+ P+P +T + S++ R P RG+ L +L+ T
Sbjct: 16 STSTSSSSPPDSASPSFSFYHPSPPNYTLAVSNLSCRDPRRGSGGAGLLSWLLGSFST 73
>11_04_0425 - 17522818-17522822,17522860-17522971,17523267-17523584
Length = 144
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = +1
Query: 1 ARGADRVRAIVMGKPRGIRTARKHVNHRR 87
A GADR R +V G PR R AR+H RR
Sbjct: 45 AAGADRRRPVV-GDPRRRRAARQHGEDRR 72
>02_02_0401 +
9847398-9847463,9848916-9849019,9849873-9849876,
9849968-9851230
Length = 478
Score = 28.7 bits (61), Expect = 2.2
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +3
Query: 3 TRSRSCSRYRNG*TSGYSHGAQARESSSRAAMGRQG 110
++ R+ S+Y+ G +S Y GA ++ ++ +QG
Sbjct: 280 SKQRTSSKYKQGASSKYKQGASSKSKQGTSSKSKQG 315
>12_01_0986 - 10009518-10009839,10009958-10011544,10012515-10013311
Length = 901
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = -2
Query: 402 NHLKSDSRNVTNSVAFTTESCNSHLIVLLNVVEATITRHECCHFLAVLNELY 247
+H+K V NS+ F I+LL+ + I C +L+V E Y
Sbjct: 376 SHMKEQWEQVHNSIGFVFSQQGIRDILLLSYYDLPINLKTCLLYLSVFPEDY 427
>09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293
Length = 352
Score = 27.5 bits (58), Expect = 5.0
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = -3
Query: 407 TLTTSNLTPGMSPTAWPLRPNPATHTSSFSSMWLRQPSRGTNAV 276
TL+ NL G SP P P P SM + QP TN V
Sbjct: 254 TLSGLNLNLGSSPAMPPPPPPPPQSILQAMSMPMNQPRSTTNQV 297
>10_01_0086 -
1064650-1065379,1065796-1065950,1066029-1066141,
1066238-1066345,1066773-1066890,1066996-1067069,
1067595-1067690,1068062-1068455
Length = 595
Score = 27.1 bits (57), Expect = 6.6
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -3
Query: 404 LTTSNLTPGMSPTAWPLRP-NPATHTSSFSSMWLRQPSRGTNAVT 273
L T LTP P A PLRP N A H SS + + PS AV+
Sbjct: 398 LITPPLTPPPMPWAAPLRPGNIAIHPSSPKQL-VYNPSNRVPAVS 441
>06_01_0267 -
1972988-1973148,1973275-1973403,1973881-1974024,
1974368-1974493,1974595-1974720,1975149-1975241,
1975465-1975606,1976747-1976878,1976943-1977080,
1977431-1977523,1978186-1978389,1978568-1978656,
1978839-1978988,1979088-1979253,1979355-1979576,
1979687-1979872,1980289-1980411,1980511-1980611,
1982005-1982155
Length = 891
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -2
Query: 387 DSRNVTNSVAFTTESCNSHLIVLLNVVEATITRHE 283
++ V + TES SH ++++NV A +HE
Sbjct: 239 EAHRVAANTKLNTESSRSHALLMVNVRRAVKGKHE 273
>04_02_0034 -
8999618-9000358,9001439-9001618,9001666-9003621,
9004647-9004786,9004871-9005282,9006399-9006638
Length = 1222
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 85 REQRWADKEFKKAHMGTRWKANPFGG 162
R +RW DK+ K R KA+PF G
Sbjct: 245 RTKRWHDKQIKIKKFKPRDKASPFCG 270
>03_06_0741 +
35893538-35895600,35896274-35896474,35896701-35896814,
35897570-35897649,35897772-35897896,35898008-35898079
Length = 884
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 101 PTRNSKKPTWVRDGRRTPSVVHL 169
PT+++ +PTWV + P+V+ L
Sbjct: 65 PTQHAPEPTWVNPSKPKPTVLSL 87
>02_01_0335 +
2386902-2386906,2386976-2387282,2387664-2387777,
2390252-2390320,2390416-2390715,2390829-2390930,
2391085-2391279,2391377-2391664,2391942-2392128,
2393168-2393272,2393778-2393824,2393982-2394074
Length = 603
Score = 26.6 bits (56), Expect = 8.7
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +1
Query: 91 QRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGK 270
++W E K+ T++ F +HA G+++ G+E +++I K GK
Sbjct: 439 EKWRRAEVPKSDSVTQY----FKNITHANGVIIHPAGLECSL-HASIDALGSCYGDKQGK 493
Query: 271 KVTAFVPR 294
K A+V R
Sbjct: 494 KYRAWVDR 501
>02_01_0125 +
920128-920392,920491-921839,921921-922084,922340-922370,
922534-922565,922730-923060,923210-923713
Length = 891
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3
Query: 140 HLVPMWAFLNSLSAHRCSRR*FTCLRAVRI 51
H+V WAFL + C F C+ V++
Sbjct: 577 HIVNSWAFLQPFTLQMCQVLQFACVNEVQL 606
>01_01_0413 -
3107668-3107796,3107879-3107971,3108082-3108253,
3108341-3108417,3108514-3108673,3108766-3108875,
3109384-3109443,3109545-3109618,3109748-3109871,
3110795-3110872,3111169-3111275,3112572-3112673,
3112800-3112815
Length = 433
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -2
Query: 159 TEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPRFTHY 31
T ++P H+ + +G S A ++ VLAR ANT + +
Sbjct: 183 TTATKVPGGWHIDGQKRWIGNSTFADVLVVLARNANTKQLNGF 225
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,322,486
Number of Sequences: 37544
Number of extensions: 295929
Number of successful extensions: 926
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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