Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_H19
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ...    50   1e-07
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.20 
SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces po...    29   0.36 
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    26   2.5  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    25   3.3  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   4.4  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    25   5.8  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    24   7.7  

>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 180

 Score = 50.0 bits (114), Expect = 1e-07
 Identities = 25/56 (44%), Positives = 34/56 (60%)
 Frame = +3

Query: 213 EEHHDIKNARMNRPLSPHLTIYSIQLTSMLSLTHRTTGLILTTYVSALGIGALVLP 380
           E +  + + R++RP SPHLTIY  QLT  LS  HR TG ++   + A  +G LV P
Sbjct: 46  EANSRLASQRVHRPNSPHLTIYEPQLTWYLSSLHRITGCVVAGTLYAFAMGYLVAP 101


>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 0.20
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 216 EHHDIKNARMNRPLSPHLTIYSI 284
           E   IKNA+M  P+S HL  YSI
Sbjct: 133 ESQRIKNAKMKSPISTHLAKYSI 155


>SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 28.7 bits (61), Expect = 0.36
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = +3

Query: 105 VLATLSRFPATLSTVNYAQSAAGVPKITFKNYEP---PKEEHHDIKNARMNRPLSPHLTI 275
           +L +LSR  +T S   Y     G+   + K+Y+P   P E   ++K   M  P +P    
Sbjct: 4   ILKSLSRSYSTTSPRLYVDVVQGLYISSLKSYKPKAVPSETAAEVKEWSM--PSAPTAPK 61

Query: 276 YSIQLTSMLS 305
           Y +  TS L+
Sbjct: 62  YDVDFTSALN 71


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = -3

Query: 105 PTYCPICHN--TTKPWFTLCQILSI 37
           PT   +CH   TTKPW  L   L++
Sbjct: 373 PTSILLCHGNITTKPWIALANNLAV 397


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 132 ATLSTVNYAQSAAGVPKITFKNYE 203
           A+  + N     +G+P +TF+NYE
Sbjct: 586 ASFESPNAKHEESGMPVVTFRNYE 609


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +3

Query: 186 TFKNYEPPKEEHHDIKNARMNRPLSPHLTIYSIQLTSMLSLTHRTTGLIL 335
           T     PPK   + I  A+   PL+P   + +  +T   +LTH T   +L
Sbjct: 463 TISTVPPPKYLSNSINGAKFLNPLAPWTLVNAPLIT---NLTHETITSLL 509


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 111 PEPTYCPICHNTTKPWF 61
           P P +C IC    + WF
Sbjct: 209 PTPEFCQICEREIQSWF 225


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 238 AFLISWCSSFGGS*FLNVIL 179
           +FL S CS FGG  F N I+
Sbjct: 15  SFLYSGCSKFGGRLFNNSIV 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,619,934
Number of Sequences: 5004
Number of extensions: 30118
Number of successful extensions: 79
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)