Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_H19
(401 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0165 + 1152520-1152582,1152995-1153060,1153688-1154065 37 0.007
07_03_0628 + 20074305-20074368,20074743-20075068 35 0.021
01_03_0071 + 12203227-12203368,12203551-12203703,12204622-122046... 31 0.34
07_03_0032 - 12651989-12652636,12652726-12652956,12653515-126536... 29 1.0
02_04_0064 - 19375497-19375580,19375659-19375733,19376359-193765... 28 3.2
08_02_1557 + 27867977-27869134 27 4.2
05_04_0344 + 20442041-20442374,20443115-20443210,20444512-204446... 26 9.7
04_01_0014 - 231228-233179,233522-233714 26 9.7
03_05_0169 + 21474655-21474771,21474879-21474971,21475553-214756... 26 9.7
>02_01_0165 + 1152520-1152582,1152995-1153060,1153688-1154065
Length = 168
Score = 36.7 bits (81), Expect = 0.007
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +3
Query: 207 PKEEHHDIKNARMNRPLSPHLTIYSIQLTSMLSLTHRTTGLIL 335
P H + NRPLSPHL + QL++ S++HR G L
Sbjct: 107 PLHTSHPLSAPVANRPLSPHLPLKKPQLSATFSISHRIFGAAL 149
>07_03_0628 + 20074305-20074368,20074743-20075068
Length = 129
Score = 35.1 bits (77), Expect = 0.021
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 246 NRPLSPHLTIYSIQLTSMLSLTHRTTGLILTTYVSAL 356
NRPLSPHL + QL++ S++HR G L + ++
Sbjct: 81 NRPLSPHLPLKKPQLSATFSISHRIFGAALGAVIISI 117
>01_03_0071 +
12203227-12203368,12203551-12203703,12204622-12204683,
12204749-12204830,12206029-12206126,12206240-12206657,
12206793-12206915,12207159-12207178
Length = 365
Score = 31.1 bits (67), Expect = 0.34
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 138 LSTVNYAQSAAGVPKITFKNYEPPKEEHHDIKNARM 245
LS Y + + PK+ NY PK HH KN M
Sbjct: 235 LSQTRYNEHSNKQPKLLTANYHGPKNMHHHHKNTNM 270
>07_03_0032 -
12651989-12652636,12652726-12652956,12653515-12653634,
12653768-12653891,12654023-12654366
Length = 488
Score = 29.5 bits (63), Expect = 1.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 242 NESPIVSTSHHLFNSIDEHVISYS*NDRVNPNDLCQC 352
NE PI ++ H ISY +D V+PND+ +C
Sbjct: 363 NEQPIGASRRHTSIDFRLPYISYGSDDDVSPNDIEEC 399
>02_04_0064 -
19375497-19375580,19375659-19375733,19376359-19376514,
19377016-19377093,19377328-19377428,19377570-19377717,
19378172-19378316,19378803-19378906,19380257-19380385,
19380526-19380636,19380734-19380863,19381915-19382034,
19382360-19382481,19382965-19383048,19383241-19383357,
19383442-19383522,19384138-19384197,19384398-19384440,
19384528-19384626,19385353-19385564,19385964-19386091,
19386246-19386396
Length = 825
Score = 27.9 bits (59), Expect = 3.2
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 147 VNYAQSAAGVPKITFKNYEPPKEEHHDIKNARMNRPLSPHLTIY 278
+ Y+ AAG Y+PP+EE + K+ + RP S L IY
Sbjct: 275 IKYSVQAAGEIPYNGIYYDPPEEEKYIFKHPQPKRPKS--LRIY 316
>08_02_1557 + 27867977-27869134
Length = 385
Score = 27.5 bits (58), Expect = 4.2
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +3
Query: 108 LATLSRFPATLSTVNYAQSAAGVPKITFKNYEP-PKEEHHDIKNARMNRPLS 260
+A S +P + SAA P +T YE P +K A N+P+S
Sbjct: 218 VAASSAYPYRARQSSCKSSAASSPAVTIDGYEDVPANSESALKKAVANQPVS 269
>05_04_0344 +
20442041-20442374,20443115-20443210,20444512-20444633,
20444781-20445029,20445300-20445549,20446036-20446262
Length = 425
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 132 ATLSTVNYAQSAAGVPKITFKNYEPPKEEHHDIKN 236
A L VNYA +AAG+ T +N+ + IKN
Sbjct: 162 AALHGVNYASAAAGILDNTGQNFVGRSPFNQQIKN 196
>04_01_0014 - 231228-233179,233522-233714
Length = 714
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 285 QLTSMLSLTHRTTGLILTTYV 347
+L S+L++ RT GLI+ TYV
Sbjct: 134 ELRSLLAMDPRTRGLIIPTYV 154
>03_05_0169 +
21474655-21474771,21474879-21474971,21475553-21475642,
21475728-21475811,21476088-21476252,21476995-21477182,
21477363-21477435,21477766-21477819,21478019-21478276,
21478891-21479097,21479293-21479396,21479809-21479953,
21480108-21480242,21480610-21480783
Length = 628
Score = 26.2 bits (55), Expect = 9.7
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 204 PPKEEHHDIKNARMNRPLSPHLT-IYSIQLTSMLSLTHRTTGLIL 335
PP + + + M + L LT Y Q+TSML++ +R LI+
Sbjct: 388 PPTIQSAEAEKKGMGKTLFERLTEAYGDQITSMLTIQYRMHELIM 432
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,613,266
Number of Sequences: 37544
Number of extensions: 195932
Number of successful extensions: 475
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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