Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_H19
         (401 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29443-5|CAA82572.1|  182|Caenorhabditis elegans Hypothetical pr...    53   9e-08
L26545-1|AAA20081.1|  182|Caenorhabditis elegans CYT-1 protein.        53   9e-08
U41992-6|AAA83357.1|  270|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z78016-4|CAC42335.1|  359|Caenorhabditis elegans Hypothetical pr...    27   3.8  
U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation...    27   3.8  
AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determini...    27   3.8  
AF077546-1|AAC26314.1|  354|Caenorhabditis elegans Hypothetical ...    27   6.7  

>Z29443-5|CAA82572.1|  182|Caenorhabditis elegans Hypothetical
           protein T07C4.7 protein.
          Length = 182

 Score = 52.8 bits (121), Expect = 9e-08
 Identities = 25/58 (43%), Positives = 35/58 (60%)
 Frame = +3

Query: 228 IKNARMNRPLSPHLTIYSIQLTSMLSLTHRTTGLILTTYVSALGIGALVLPNDIAYYM 401
           +K    NRP++PHLT+Y  QLT MLS  HR +G ++   +   GIG  VLP D   ++
Sbjct: 45  LKQRSKNRPIAPHLTVYQPQLTWMLSGFHRISGCVMAGTLLVGGIGFAVLPFDFTAFV 102


>L26545-1|AAA20081.1|  182|Caenorhabditis elegans CYT-1 protein.
          Length = 182

 Score = 52.8 bits (121), Expect = 9e-08
 Identities = 25/58 (43%), Positives = 35/58 (60%)
 Frame = +3

Query: 228 IKNARMNRPLSPHLTIYSIQLTSMLSLTHRTTGLILTTYVSALGIGALVLPNDIAYYM 401
           +K    NRP++PHLT+Y  QLT MLS  HR +G ++   +   GIG  VLP D   ++
Sbjct: 45  LKQRSKNRPIAPHLTVYQPQLTWMLSGFHRISGCVMAGTLLVGGIGFAVLPFDFTAFV 102


>U41992-6|AAA83357.1|  270|Caenorhabditis elegans Hypothetical
           protein F32E10.2 protein.
          Length = 270

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 171 GVPKITFKNYEPPKEEHHDIKNARMNRPLSPHLTIYSIQLTSMLSLT 311
           G PK  F   E  K  H D K    ++ +  H   Y ++LTS  ++T
Sbjct: 11  GTPKTNFTKKETSKN-HDDFKKIIGHKVVEEHYVEYEVELTSGKTIT 56


>Z78016-4|CAC42335.1|  359|Caenorhabditis elegans Hypothetical
           protein R186.7 protein.
          Length = 359

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +3

Query: 87  RLGNKSVLATLSRFPATLSTVNYAQSAAGVPK----ITFKNYEPPKEEHHDIKNAR 242
           RL +  ++ TLS F  T       +    V K       K++E  KEE HD+ N R
Sbjct: 162 RLFSNLIMGTLSSFKKTEKKTTQQEKQEEVEKKLEETKKKDFESRKEEKHDLLNKR 217


>U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation of
            germline protein5 protein.
          Length = 1200

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 198  YEPP-KEEHHDIKNARMNRPLSPHLTIYSI 284
            Y P  K++H D K A+ ++P   HLT+ ++
Sbjct: 994  YRPKEKQDHADQKKAKFHQPEGDHLTLLAV 1023


>AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determining
            protein MOG-5 protein.
          Length = 1200

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 198  YEPP-KEEHHDIKNARMNRPLSPHLTIYSI 284
            Y P  K++H D K A+ ++P   HLT+ ++
Sbjct: 994  YRPKEKQDHADQKKAKFHQPEGDHLTLLAV 1023


>AF077546-1|AAC26314.1|  354|Caenorhabditis elegans Hypothetical
           protein T08E11.6 protein.
          Length = 354

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +3

Query: 147 VNYAQSAAGVPKITFKN---YEPPKEEHHDIKNARMNRPLSPHLTIYSIQ 287
           +N   + AG  +    N   Y+P  EEHH ++    N  L PH   + I+
Sbjct: 273 INQFNNGAGYNEAVISNGIDYQPSMEEHHGVQ--ENNYHLHPHTRKFDIR 320


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,035,683
Number of Sequences: 27780
Number of extensions: 171181
Number of successful extensions: 447
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)