Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_H18
         (346 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    28   0.35 
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    28   0.47 
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   2.5  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    25   3.3  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    25   3.3  
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p...    25   4.4  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    25   4.4  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    24   5.8  
SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase |Schizosacchar...    24   7.6  

>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 28.3 bits (60), Expect = 0.35
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -1

Query: 313 SQSLQTGCYYGWCRLSSGKQSCSRSVQRVWNAYRAGVS-ECRELRVDEAYHSS 158
           S S  +  + GW    S K+S S+S+  V N Y  GVS    +    E YH S
Sbjct: 240 SDSPSSDLHLGWDHTVS-KESMSQSIAEVLNPYNKGVSRSLNDATNMETYHWS 291


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 27.9 bits (59), Expect = 0.47
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 274 RLSSGKQSCSRSVQRVWNAYRAGVSECRELRVDEAYHSSQ 155
           +L  GK  C R  QR   +  A    CR   +D ++HS +
Sbjct: 294 KLEEGKSVCLRLYQRNNGSILAFPRSCRSFALDGSFHSDE 333


>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 340 ENVKDFHRSSQSLQTGCYYGWCRLSSGKQSCSRSVQRV 227
           E+   F R  Q++    Y G  + +  KQSCS    RV
Sbjct: 190 ESFNSFSRKMQTISNSRYRGSPKPNIEKQSCSSESDRV 227


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +3

Query: 9    HVV-VKVPITEPASQCFGRNCFVLRWLQGAKRAEK*YQRDLQP 134
            H+V   VP+ EP   C+       RWL    +    +QR + P
Sbjct: 1288 HIVNFTVPLLEPLPPCYFIKIVSDRWLHSITKVPLSFQRLIMP 1330


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +1

Query: 28  PSLSQRPSVSDETALFYAGCRVPNAPKSSISEIFSPETTEGSPVKN 165
           P++  + +++D   +F    R  +  KSS S I +  +  G+P+KN
Sbjct: 382 PTIHTKAALADILDIFNQPLRSESLEKSSKSPISAQSSYLGTPLKN 427


>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 612

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +3

Query: 153 PCEEWYASSTRSSRHSDTPARYAFQTL--WTDREQLCFPD 266
           PC +   S T S+++SD P++++ + +  W+  ++  F D
Sbjct: 468 PCYKLAESWTNSAKNSDDPSKFSSKDIENWSAGQKSLFLD 507


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 7   GTWLLKCPSLSQRPSVSDETALFYAGCRVPNAPKSSISEIFS 132
           G+  L  P  + R  ++    LF +    PN P+SS S + S
Sbjct: 40  GSTRLTTPRTTARTPLASSPLLFESSSPGPNIPQSSRSHLLS 81


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = -2

Query: 324 STVHLRVSKQDVTTDGVGYHRGSRVVRDLSKESGMRIARACRSVANYA 181
           STV      +D+    + Y+      +DLS ES +     C+ + N A
Sbjct: 348 STVIGNPKYKDIQAAYLYYYASDSCPKDLSSESQLAFVERCKLIVNDA 395


>SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 229 LFGQIANNSASPMITDTIRSNILF 300
           LF +   NSAS   T T++SN+LF
Sbjct: 57  LFTKSPRNSASCESTITLQSNLLF 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.127    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,416,718
Number of Sequences: 5004
Number of extensions: 24609
Number of successful extensions: 63
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)