Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_H18
(346 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0394 + 17535525-17535656,17537205-17538371,17540558-17541448 30 0.56
10_08_0461 - 18113348-18113389,18113683-18114231 29 1.3
06_02_0333 + 14567509-14568081,14568109-14568438,14568642-145695... 28 1.7
01_06_1561 - 38255397-38255595,38255712-38255867,38256040-38257163 28 2.3
06_03_0690 + 23545198-23545305,23545437-23547246,23547265-235473... 27 5.2
02_04_0363 + 22369461-22370127,22370240-22370310,22370412-223709... 26 6.9
12_01_0924 + 9161155-9161646,9161748-9162164,9162250-9162313,916... 26 9.1
09_04_0415 - 17396118-17396410,17396881-17397082 26 9.1
09_04_0268 - 16253312-16253358,16253618-16253789,16253881-162543... 26 9.1
06_03_1248 + 28685911-28687719 26 9.1
>10_08_0394 + 17535525-17535656,17537205-17538371,17540558-17541448
Length = 729
Score = 29.9 bits (64), Expect = 0.56
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -1
Query: 241 SVQRVWNAYRAGVSECRELRV--DEAYHSSQGCLLLSPG*RSR*YYFS 104
S R+W V E E+R + +H+ G ++ P RSR YYF+
Sbjct: 54 SGDRIWGLEMKEVGEVEEVRCLDPQLWHACAGGMVQMPAPRSRVYYFA 101
>10_08_0461 - 18113348-18113389,18113683-18114231
Length = 196
Score = 28.7 bits (61), Expect = 1.3
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = -1
Query: 325 FHRSSQSLQTGCYYGWCRLSSGKQSCSRSVQRVWNAYRAGVSECRELRVDEAYHSSQGC 149
FHR+++ L GW RL G++ C R ++ A A RV + S GC
Sbjct: 80 FHRNTE-LVVALSSGWLRLGGGRRRCHRRIRVFAVAGAASGRSSVVARVVDDCDSVNGC 137
>06_02_0333 +
14567509-14568081,14568109-14568438,14568642-14569550,
14569598-14569777,14570416-14570698,14571339-14571832
Length = 922
Score = 28.3 bits (60), Expect = 1.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 10 TWLLKCPSLSQRPSVSDETALFYA 81
TWLL P S++PSV ++ A F A
Sbjct: 361 TWLLPFPQRSRKPSVDEQFAHFVA 384
>01_06_1561 - 38255397-38255595,38255712-38255867,38256040-38257163
Length = 492
Score = 27.9 bits (59), Expect = 2.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 34 LSQRPSVSDETALFYAGCRVPNAPKSSISEIFSPETTEGSP 156
+SQ S++DE A +PN+PK S S I + G P
Sbjct: 79 ISQAGSINDEWADPMKNVILPNSPKESESSISCAGSNNGEP 119
>06_03_0690 +
23545198-23545305,23545437-23547246,23547265-23547348,
23547732-23548048,23549498-23549605,23550038-23550046
Length = 811
Score = 26.6 bits (56), Expect = 5.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 345 RRRM*RTSTVHLRVSKQDVTTDGVGYHRG 259
RRR+ T+H+R+ +DV D G+ RG
Sbjct: 137 RRRISHGPTIHVRLQFRDVAGDRHGWGRG 165
>02_04_0363 +
22369461-22370127,22370240-22370310,22370412-22370978,
22371056-22371301
Length = 516
Score = 26.2 bits (55), Expect = 6.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 138 DNRRQPCEEWYASSTRSSRHSDTPARYAFQ 227
DN R+ +EWYA + ++ + PA A Q
Sbjct: 480 DNVRRCLQEWYALAEHQAQDEEDPAAAAAQ 509
>12_01_0924 +
9161155-9161646,9161748-9162164,9162250-9162313,
9162621-9163030
Length = 460
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 22 KCPSLSQRPSVSDETALFYAGCRVPNAPKSSISEIFSPETTEG 150
K S+ R VSD YAGCR + S+ ++ + + G
Sbjct: 66 KRDSMKFRRLVSDSETPLYAGCRAKHTKLSATLDLMKLKASSG 108
>09_04_0415 - 17396118-17396410,17396881-17397082
Length = 164
Score = 25.8 bits (54), Expect = 9.1
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -3
Query: 335 CEGLPPFISESPNRMLLRMVSVIIGEAELFAI 240
C P E+PNR ++ + + + E+FAI
Sbjct: 99 CRQYNPMTKEAPNRQMIILGTESLSSTEIFAI 130
>09_04_0268 -
16253312-16253358,16253618-16253789,16253881-16254359,
16255723-16255801,16255918-16255923
Length = 260
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 265 SGKQSCSRSVQRVWNAYRAGVSECRE 188
SGKQ +R YRA VS+CR+
Sbjct: 12 SGKQEANRFPANSSAPYRANVSDCRK 37
>06_03_1248 + 28685911-28687719
Length = 602
Score = 25.8 bits (54), Expect = 9.1
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = +3
Query: 132 PGDNRRQPCEEWYASSTRSSRHSDTPARYAFQ-TLWTDREQL 254
PG R QP EE + T + +PA A Q T R QL
Sbjct: 211 PGPTRAQPTEEHHQQPTEAPPAEPSPAAAAVQEEAVTSRAQL 252
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.310 0.127 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,833,728
Number of Sequences: 37544
Number of extensions: 180434
Number of successful extensions: 379
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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