Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_H18
(346 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X76556-1|CAA54056.1| 447|Homo sapiens CAB3b protein. 29 2.9
X76555-1|CAA54055.1| 484|Homo sapiens CAB3a protein. 29 3.9
U07139-1|AAA95958.1| 484|Homo sapiens voltage-gated calcium cha... 29 3.9
D43704-1|BAA07803.1| 484|Homo sapiens voltage-dependant calcium... 29 3.9
BC041811-1|AAH41811.1| 484|Homo sapiens calcium channel, voltag... 29 3.9
X52186-1|CAA36433.1| 1805|Homo sapiens integrin beta 4 subunit p... 28 6.8
X51841-1|CAA36134.1| 1752|Homo sapiens protein ( Human mRNA for ... 28 6.8
U66541-3|AAC51632.1| 1752|Homo sapiens beta4-integrin protein. 28 6.8
U66541-2|AAC51634.1| 1805|Homo sapiens beta4-integrin protein. 28 6.8
BC126411-1|AAI26412.1| 1752|Homo sapiens integrin, beta 4 protein. 28 6.8
BC118916-1|AAI18917.1| 1752|Homo sapiens ITGB4 protein protein. 28 6.8
AB208913-1|BAD92150.1| 1515|Homo sapiens integrin beta 4 isoform... 28 6.8
X53587-1|CAA37656.1| 1822|Homo sapiens integrin beta 4 protein p... 28 9.0
U66541-1|AAC51633.1| 1822|Homo sapiens beta4-integrin protein. 28 9.0
L27584-1|AAA19799.1| 482|Homo sapiens Ca channel B3 subunit pro... 28 9.0
BC007069-1|AAH07069.1| 162|Homo sapiens riboflavin kinase protein. 28 9.0
AL391868-2|CAI40676.1| 155|Homo sapiens riboflavin kinase protein. 28 9.0
AK002011-1|BAA92033.1| 162|Homo sapiens protein ( Homo sapiens ... 28 9.0
AJ430733-1|CAD23503.1| 128|Homo sapiens immunoglobulin heavy ch... 28 9.0
AJ251004-1|CAB61345.1| 1873|Homo sapiens integrin beta 4 protein. 28 9.0
>X76556-1|CAA54056.1| 447|Homo sapiens CAB3b protein.
Length = 447
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 117 QRD-LQPGDNRRQPCEE-WYASSTRSSRHSDTPARYAFQTLWTDREQL 254
+RD L P D + + W SS RSSRH + A+Q L+ + QL
Sbjct: 396 ERDSLMPSDEASESSRQAWTGSSQRSSRHLEEDYADAYQDLYQPQCQL 443
>X76555-1|CAA54055.1| 484|Homo sapiens CAB3a protein.
Length = 484
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 117 QRD-LQPGDNRRQPCEE-WYASSTRSSRHSDTPARYAFQTLWTDREQ 251
+RD L P D + + W SS RSSRH + A+Q L+ Q
Sbjct: 396 ERDSLMPSDEASESSRQAWTGSSQRSSRHLEEDYADAYQDLYQPHRQ 442
>U07139-1|AAA95958.1| 484|Homo sapiens voltage-gated calcium
channel beta subunit protein.
Length = 484
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 117 QRD-LQPGDNRRQPCEE-WYASSTRSSRHSDTPARYAFQTLWTDREQ 251
+RD L P D + + W SS RSSRH + A+Q L+ Q
Sbjct: 396 ERDSLMPSDEASESSRQAWTGSSQRSSRHLEEDYADAYQDLYQPHRQ 442
>D43704-1|BAA07803.1| 484|Homo sapiens voltage-dependant calcium
channel beta3 subunit protein.
Length = 484
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 117 QRD-LQPGDNRRQPCEE-WYASSTRSSRHSDTPARYAFQTLWTDREQ 251
+RD L P D + + W SS RSSRH + A+Q L+ Q
Sbjct: 396 ERDSLMPSDEASESSRQAWTGSSQRSSRHLEEDYADAYQDLYQPHRQ 442
>BC041811-1|AAH41811.1| 484|Homo sapiens calcium channel,
voltage-dependent, beta 3 subunit protein.
Length = 484
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 117 QRD-LQPGDNRRQPCEE-WYASSTRSSRHSDTPARYAFQTLWTDREQ 251
+RD L P D + + W SS RSSRH + A+Q L+ Q
Sbjct: 396 ERDSLMPSDEASESSRQAWTGSSQRSSRHLEEDYADAYQDLYQPHRQ 442
>X52186-1|CAA36433.1| 1805|Homo sapiens integrin beta 4 subunit
protein.
Length = 1805
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +1
Query: 16 LLKCPSLSQRPSVSDETALFYAGCRVPNAPKSSISEIFSPETTEGS 153
+L+ PS SQRPSVSD+T G R+ A S + + TT +
Sbjct: 1353 VLRSPSGSQRPSVSDDTEHLVNG-RMDFAFPGSTNSLHRMTTTSAA 1397
>X51841-1|CAA36134.1| 1752|Homo sapiens protein ( Human mRNA for
integrin beta(4)subunit. ).
Length = 1752
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +1
Query: 16 LLKCPSLSQRPSVSDETALFYAGCRVPNAPKSSISEIFSPETTEGS 153
+L+ PS SQRPSVSD+T G R+ A S + + TT +
Sbjct: 1353 VLRSPSGSQRPSVSDDTEHLVNG-RMDFAFPGSTNSLHRMTTTSAA 1397
>U66541-3|AAC51632.1| 1752|Homo sapiens beta4-integrin protein.
Length = 1752
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +1
Query: 16 LLKCPSLSQRPSVSDETALFYAGCRVPNAPKSSISEIFSPETTEGS 153
+L+ PS SQRPSVSD+T G R+ A S + + TT +
Sbjct: 1353 VLRSPSGSQRPSVSDDTEHLVNG-RMDFAFPGSTNSLHRMTTTSAA 1397
>U66541-2|AAC51634.1| 1805|Homo sapiens beta4-integrin protein.
Length = 1805
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +1
Query: 16 LLKCPSLSQRPSVSDETALFYAGCRVPNAPKSSISEIFSPETTEGS 153
+L+ PS SQRPSVSD+T G R+ A S + + TT +
Sbjct: 1353 VLRSPSGSQRPSVSDDTEHLVNG-RMDFAFPGSTNSLHRMTTTSAA 1397
>BC126411-1|AAI26412.1| 1752|Homo sapiens integrin, beta 4 protein.
Length = 1752
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +1
Query: 16 LLKCPSLSQRPSVSDETALFYAGCRVPNAPKSSISEIFSPETTEGS 153
+L+ PS SQRPSVSD+T G R+ A S + + TT +
Sbjct: 1353 VLRSPSGSQRPSVSDDTEHLVNG-RMDFAFPGSTNSLHRMTTTSAA 1397
>BC118916-1|AAI18917.1| 1752|Homo sapiens ITGB4 protein protein.
Length = 1752
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +1
Query: 16 LLKCPSLSQRPSVSDETALFYAGCRVPNAPKSSISEIFSPETTEGS 153
+L+ PS SQRPSVSD+T G R+ A S + + TT +
Sbjct: 1353 VLRSPSGSQRPSVSDDTEHLVNG-RMDFAFPGSTNSLHRMTTTSAA 1397
>AB208913-1|BAD92150.1| 1515|Homo sapiens integrin beta 4 isoform 3
precursor variant protein.
Length = 1515
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +1
Query: 16 LLKCPSLSQRPSVSDETALFYAGCRVPNAPKSSISEIFSPETTEGS 153
+L+ PS SQRPSVSD+T G R+ A S + + TT +
Sbjct: 1385 VLRSPSGSQRPSVSDDTEHLVNG-RMDFAFPGSTNSLHRMTTTSAA 1429
>X53587-1|CAA37656.1| 1822|Homo sapiens integrin beta 4 protein
protein.
Length = 1822
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +1
Query: 16 LLKCPSLSQRPSVSDET 66
+L+ PS SQRPSVSD+T
Sbjct: 1353 VLRSPSGSQRPSVSDDT 1369
>U66541-1|AAC51633.1| 1822|Homo sapiens beta4-integrin protein.
Length = 1822
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +1
Query: 16 LLKCPSLSQRPSVSDET 66
+L+ PS SQRPSVSD+T
Sbjct: 1353 VLRSPSGSQRPSVSDDT 1369
>L27584-1|AAA19799.1| 482|Homo sapiens Ca channel B3 subunit
protein.
Length = 482
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 117 QRD-LQPGDNRRQPCEE-WYASSTRSSRHSDTPARYAFQTLWTDREQ 251
+RD L P D + + W SS R+SRH + A+Q L+ Q
Sbjct: 394 ERDSLMPSDEASESSRQAWTGSSQRTSRHLEEDYADAYQDLYQPHRQ 440
>BC007069-1|AAH07069.1| 162|Homo sapiens riboflavin kinase protein.
Length = 162
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = -1
Query: 304 LQTGCYYGWCRLSSGKQSCSRSVQRVWNAYRAGVSECRELRV 179
+ TG YYGW + SG V WN Y + E +
Sbjct: 49 ISTGIYYGWASVGSGDVH-KMVVSIGWNPYYKNTKKSMETHI 89
>AL391868-2|CAI40676.1| 155|Homo sapiens riboflavin kinase protein.
Length = 155
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = -1
Query: 304 LQTGCYYGWCRLSSGKQSCSRSVQRVWNAYRAGVSECRELRV 179
+ TG YYGW + SG V WN Y + E +
Sbjct: 42 ISTGIYYGWASVGSGDVH-KMVVSIGWNPYYKNTKKSMETHI 82
>AK002011-1|BAA92033.1| 162|Homo sapiens protein ( Homo sapiens
cDNA FLJ11149 fis, clone PLACE1006731, weakly similar to
RIBOFLAVIN KINASE (EC 2.7.1.26)/ FMN ADENYLYLTRANSFERASE
(EC ).
Length = 162
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = -1
Query: 304 LQTGCYYGWCRLSSGKQSCSRSVQRVWNAYRAGVSECRELRV 179
+ TG YYGW + SG V WN Y + E +
Sbjct: 49 ISTGIYYGWASVGSGDVH-KMVVSIGWNPYYKNTKKSMETHI 89
>AJ430733-1|CAD23503.1| 128|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 128
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 322 HRSSQSLQTGCYYGWCRLSSGK 257
H S S+ G Y+GW R S GK
Sbjct: 27 HVSGYSISDGYYWGWIRQSPGK 48
>AJ251004-1|CAB61345.1| 1873|Homo sapiens integrin beta 4 protein.
Length = 1873
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +1
Query: 16 LLKCPSLSQRPSVSDET 66
+L+ PS SQRPSVSD+T
Sbjct: 1352 VLRSPSGSQRPSVSDDT 1368
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.310 0.127 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,247,872
Number of Sequences: 237096
Number of extensions: 903898
Number of successful extensions: 1717
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1717
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1968306988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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