Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_H18
         (346 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68493-10|CAA92797.2|  329|Caenorhabditis elegans Hypothetical p...    26   8.3  
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co...    26   8.3  
AC025721-9|AAK29904.3|  639|Caenorhabditis elegans Hypothetical ...    26   8.3  

>Z68493-10|CAA92797.2|  329|Caenorhabditis elegans Hypothetical
           protein C33A12.14 protein.
          Length = 329

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 167 PFFTGLPSVVSGLKISLILLFGAFGTLQPA*NKAV 63
           P+F  +P++   LKI L+ L   + T++P  N+ V
Sbjct: 32  PWFYMIPTIYVTLKIFLVYLTNDWDTVEPGKNQYV 66


>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore complex
            protein protein7 protein.
          Length = 1217

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 223  SRLFGQIANNSASPMITDTIRSNILFGDSEMNGGSP 330
            S +FG   N  + P ++ +  +N LFG +  +  +P
Sbjct: 1089 SGVFGAFGNKPSQPGLSSSSSTNSLFGQAPADSSNP 1124


>AC025721-9|AAK29904.3|  639|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.5 protein.
          Length = 639

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 183 RSSRHSDTPARYAFQTLWTDREQLCFPDDNR 275
           R++   D P  + FQ    DREQL    +NR
Sbjct: 64  RAALQRDLPVSFRFQGCHKDREQLIHEMENR 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.310    0.127    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,044,326
Number of Sequences: 27780
Number of extensions: 146101
Number of successful extensions: 357
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)