Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_H17
         (71 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   1.4  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   1.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   2.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    19   4.2  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +3

Query: 12  PFFISIFNYYFIL 50
           P F+ I++Y+FI+
Sbjct: 228 PLFLIIYSYWFII 240


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +3

Query: 12  PFFISIFNYYFIL 50
           P F+ I++Y+FI+
Sbjct: 104 PLFLIIYSYWFII 116


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +3

Query: 12  PFFISIFNYYFILNYFLISS 71
           P F+ +F YY I    +I +
Sbjct: 218 PLFVMVFTYYKIYRAAVIQT 237


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 15  FFISIFNYYFIL 50
           FFI IF Y  IL
Sbjct: 413 FFIVIFTYIIIL 424


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,625
Number of Sequences: 438
Number of extensions: 75
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 5
effective length of database: 144,153
effective search space used:  2594754
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)