Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_H16
(332 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.11
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 29 0.25
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 0.99
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 26 1.7
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 25 2.3
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ... 25 2.3
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 25 2.3
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 4.0
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ... 25 4.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 4.0
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 24 5.3
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 24 5.3
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 24 7.0
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 24 7.0
SPAC2F3.02 |||ER protein translocation subcomplex subunit|Schizo... 24 7.0
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 24 7.0
SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos... 24 7.0
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 23 9.2
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 23 9.2
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 23 9.2
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 23 9.2
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 23 9.2
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.9 bits (64), Expect = 0.11
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Frame = -3
Query: 321 SNNTSPSLIRFFPMSTLVVGSRSVPDGGMPRVST---FRNSFFDTVSEQKADTASILSSL 151
S+++SPS +++ + + S+P ST +S + + + ++SI+SS
Sbjct: 217 SSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSS 276
Query: 150 SVGNLTPHKTNSCANGGSTSVPAGNVASRVTSIISRFP*SM*NTWMTSS 4
S + +P T+S + S+S + S S S S +T +SS
Sbjct: 277 SSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSS 325
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 28.7 bits (61), Expect = 0.25
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -3
Query: 120 NSCANGGSTSVPAGNVASRVTSI 52
N ANG S PAGNVA TS+
Sbjct: 291 NRSANGRSAPCPAGNVAGMTTSL 313
>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 368
Score = 26.6 bits (56), Expect = 0.99
Identities = 22/75 (29%), Positives = 34/75 (45%)
Frame = -3
Query: 267 VGSRSVPDGGMPRVSTFRNSFFDTVSEQKADTASILSSLSVGNLTPHKTNSCANGGSTSV 88
VG+ S+P GG+ +S+ S K+ S+ S S + TP AN S S+
Sbjct: 189 VGAASLPSGGLSNLSS------SLRSSSKSAGFSLFESAS-NSFTPSSFIESANMESLSI 241
Query: 87 PAGNVASRVTSIISR 43
P+ S + I +R
Sbjct: 242 PSRRRPSSIAPIGTR 256
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 25.8 bits (54), Expect = 1.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 205 ETVPEC*DARHSAIRHTPRPNNQC*HRKESN 297
ET+P DA+H+ + H P Q KE N
Sbjct: 195 ETLPSKEDAQHARVAHIPIEEKQEDSEKEGN 225
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 25.4 bits (53), Expect = 2.3
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 137 KFPTDNDDRMEAVSAFCSDTVSKKLFLNVETRGIPPSGTLL 259
K PTDNDD ++V+ +++F N+E + P S T L
Sbjct: 260 KIPTDNDDSRDSVA-----YALQRVFYNLEKQREPVSTTEL 295
>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 170
Score = 25.4 bits (53), Expect = 2.3
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -1
Query: 296 LDSFLCQHWLLGRGVCRMAECRASQHSGTVSSTQYQSRKPTPLPFY 159
+ S +C+HWL RG+C+ E H +Y +K P FY
Sbjct: 49 MGSVVCKHWL--RGLCKKGEQCDFLH-------EYNLKKMPPCHFY 85
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 25.4 bits (53), Expect = 2.3
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -3
Query: 183 KADTASILSSLSVGNLTPHKTNSCANGGSTSVPA 82
K +IL S V +TP + +S AN GSTS P+
Sbjct: 643 KPSKNNILKSTQVP-VTPKQKSSTANKGSTSSPS 675
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 24.6 bits (51), Expect = 4.0
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = -3
Query: 261 SRSVPDGGMPRVSTFRNSFFDTVSEQKADTASILSSLSVGNLTP-HKTNSCANGGSTSVP 85
S +P + S +S T T +SS S+ + TP + TN G +T+
Sbjct: 226 SSFLPSSVISSASLSSSSVLPTSIITSTSTPVTVSSSSLSSFTPSYSTNLTTTGSTTTTG 285
Query: 84 AGNVAS 67
+ V+S
Sbjct: 286 SATVSS 291
>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 878
Score = 24.6 bits (51), Expect = 4.0
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Frame = +2
Query: 20 VFYIDYGNREMIEVTRLATLPAGTEVDPPFAHEFVLCGVKFPTDNDDRME-AVSAFCSDT 196
V DYG+ E I +++LP P A L V+ P + D E A F
Sbjct: 729 VLLYDYGSVEQIPFKNISSLPDTYTKLKPQAQLARLSYVQLPPPSSDYYEDARLVFRELA 788
Query: 197 VSKKLFLNVE-TRGIPPSGTLLDPTTNVD 280
++K L V+ G S TL +P+ D
Sbjct: 789 MNKGLVAKVDGHEGNVYSVTLYNPSDGSD 817
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 24.6 bits (51), Expect = 4.0
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Frame = -3
Query: 279 STLVVGSRSVPD-GGMPRVSTFRNSFFDTVSEQKADTASI-----LSSLSVGNLTPHKTN 118
ST S S+P GG +ST TV + SI +S + N +P T
Sbjct: 169 STSCTTSTSIPPTGGSSSLST---PITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTT 225
Query: 117 SCANGGSTSVPAGNVASRVTSIISRFP 37
S + STS+P G +S T I P
Sbjct: 226 STSCTTSTSIPTGGSSSLSTPITPTVP 252
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 24.2 bits (50), Expect = 5.3
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 134 HRIRQTHVQTVDQPQSQPVTWLAVSLRSSRDSHNQ 30
H I QT T Q++ T L+SS+D H Q
Sbjct: 722 HSIFQTRETTSPSVQNKTPTKYHRELKSSKDGHEQ 756
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 24.2 bits (50), Expect = 5.3
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Frame = -3
Query: 291 FFPMSTLVVGSRSVP--DGGMPRVSTFRNSFFDTVSEQKADTASILSSLSVGNLTPHKTN 118
F S L S S P + + STF +S F+T S +AS SS S ++ P T
Sbjct: 625 FNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTTSGLPTSSASTPSSNS--SIVPTSTF 682
Query: 117 SCANGGSTS-VPAGNVASRVTS 55
+ + +TS +P + ++ +++
Sbjct: 683 TSSGFNTTSGLPTSSASTPLSN 704
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 23.8 bits (49), Expect = 7.0
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +2
Query: 143 PTDNDDRMEAVSAFCSDTVSKKLFLNVETRGIPPSGTLLDPTTNVD 280
PTD++ + S+F DT++ K N R P+ T++D
Sbjct: 553 PTDDEPYTDRDSSFVDDTINTKATGNTSNRLSLPAYPTDGGDTSID 598
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 23.8 bits (49), Expect = 7.0
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 246 DGGMPRVSTFRNSFFDTVSEQKADTASILSSLSVGNLTP 130
D +STFR+ FD + ADT LSS ++ TP
Sbjct: 393 DSSNSLLSTFRSWLFDPKQKHTADT---LSSSAIRPRTP 428
>SPAC2F3.02 |||ER protein translocation subcomplex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 23.8 bits (49), Expect = 7.0
Identities = 7/24 (29%), Positives = 16/24 (66%)
Frame = +2
Query: 257 LDPTTNVDIGKNLIKDGLVLLDPI 328
L+ ++ K +++DGL+L +P+
Sbjct: 153 LEAMHRIEEAKQVVRDGLILAEPV 176
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 23.8 bits (49), Expect = 7.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 141 NLTPHKTNSCANGGSTSVPAGNVAS 67
NLTP S A+ GST N+A+
Sbjct: 266 NLTPSLAASTASTGSTDSSGSNIAN 290
>SPAC607.05 |rpn9||19S proteasome regulatory subunit
Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 23.8 bits (49), Expect = 7.0
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Frame = -1
Query: 221 HSGTVS-STQYQSRKPTPLPFYRHCLL 144
HS S S Y K +YRHCLL
Sbjct: 158 HSSYYSVSADYYKAKADYAQYYRHCLL 184
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 23.4 bits (48), Expect = 9.2
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +2
Query: 134 VKFPTDNDDRMEAVSAFCSDTVSKKLFLNVETRGIPPSGTLLDPTTNVDIGKNLI 298
VKF D+D +EAV + S L+ + ++G P + + + D+ N +
Sbjct: 492 VKFEDDSDKAIEAVKWIAEERNSSILYDFLASQGRPSNKKPKEVPMDEDLAYNTL 546
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 23.4 bits (48), Expect = 9.2
Identities = 15/66 (22%), Positives = 29/66 (43%)
Frame = -3
Query: 264 GSRSVPDGGMPRVSTFRNSFFDTVSEQKADTASILSSLSVGNLTPHKTNSCANGGSTSVP 85
GS+S+ + ST S ++ ++SILS+ ++ +P T S S+ +
Sbjct: 76 GSKSLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILS 135
Query: 84 AGNVAS 67
+ S
Sbjct: 136 NSTIPS 141
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 23.4 bits (48), Expect = 9.2
Identities = 12/46 (26%), Positives = 17/46 (36%)
Frame = +2
Query: 134 VKFPTDNDDRMEAVSAFCSDTVSKKLFLNVETRGIPPSGTLLDPTT 271
V P + D+ V + K+ T +PP G PTT
Sbjct: 417 VNAPAETQDKSTVVPQESATATPKRSPSATPTSALPPIGKFAPPTT 462
>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 419
Score = 23.4 bits (48), Expect = 9.2
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = -3
Query: 231 RVSTFRNSFFDTVSEQKADTASILSSLSVGNLTPHKTNSCANGGSTS 91
RVS+F+NS + T++ + ++ +S + L +S NG S+S
Sbjct: 235 RVSSFQNSQYSTLNNFQNNSNQSPNSNDLQPLQAEAFHSAHNGYSSS 281
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 23.4 bits (48), Expect = 9.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 41 NREMIEVTRLATLPAGTEVDPPFAHEFVLC 130
NR + VT+ +LP+ E D F HE +C
Sbjct: 403 NRLIPSVTK--SLPSAMEFDADFLHEVDVC 430
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,505,970
Number of Sequences: 5004
Number of extensions: 30089
Number of successful extensions: 115
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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