Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_H16
(332 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40029-11|AAA81130.1| 914|Caenorhabditis elegans Tudor staphylo... 58 1e-09
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 32 0.11
U53153-7|AAC69037.1| 1280|Caenorhabditis elegans Hypothetical pr... 29 0.61
Z68012-4|CAA92018.1| 89|Caenorhabditis elegans Hypothetical pr... 29 1.1
U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical p... 28 1.9
Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical p... 27 3.3
Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical p... 27 3.3
Z49936-3|CAD90174.1| 1000|Caenorhabditis elegans Hypothetical pr... 26 7.5
Z49936-1|CAA90182.1| 930|Caenorhabditis elegans Hypothetical pr... 26 7.5
AY834227-1|AAV91313.1| 984|Caenorhabditis elegans Toll and inte... 26 7.5
AY834226-1|AAV91312.1| 931|Caenorhabditis elegans Toll and inte... 26 7.5
AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical... 26 7.5
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr... 25 10.0
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr... 25 10.0
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr... 25 10.0
Z12017-7|CAH19088.1| 856|Caenorhabditis elegans Hypothetical pr... 25 10.0
Z12017-6|CAE47469.1| 734|Caenorhabditis elegans Hypothetical pr... 25 10.0
Z12017-5|CAA78052.2| 859|Caenorhabditis elegans Hypothetical pr... 25 10.0
U50068-5|AAB37734.1| 722|Caenorhabditis elegans Temporarily ass... 25 10.0
AC091125-8|AAP46267.1| 353|Caenorhabditis elegans Hypothetical ... 25 10.0
AC091125-7|AAK27890.1| 510|Caenorhabditis elegans Hypothetical ... 25 10.0
>U40029-11|AAA81130.1| 914|Caenorhabditis elegans Tudor
staphylococcal nuclease homologprotein 1 protein.
Length = 914
Score = 58.4 bits (135), Expect = 1e-09
Identities = 42/106 (39%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Frame = +2
Query: 20 VFYIDYGNREMIEVTRLATLPAGTEVDPPFAHEFVLCGVKFPTDNDDRMEAVS-AFCSDT 196
+ YIDYGNRE IE +LA +PAG P E+ L K P N+D ++ S AF
Sbjct: 772 IVYIDYGNRETIEAVKLAQIPAGFANFPAGVREYNLALAKLP--NEDYVQLTSDAFAQYL 829
Query: 197 VS-KKLFLNVETR-GIPPSGTLLDPTTN--VDIGKNLIKDGLVLLD 322
+F+N E + G T+ + N VDIGK+LI +GL L D
Sbjct: 830 FGHSSVFINSEYKVGTSEYVTVYYDSGNKKVDIGKSLIAEGLALAD 875
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 31.9 bits (69), Expect = 0.11
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = -3
Query: 321 SNNTSPSLIRFFPMSTLVVGSRSVPDGGMPRVSTFRNSFFDTVSEQKADTASILSSLSVG 142
+ +T S I +ST+ V + S G ST S TVS T S SS S+G
Sbjct: 1136 TGSTGESTILESSVSTVSVSTGSTITDG----STASRSSVSTVSASTESTVSGGSSASIG 1191
Query: 141 NL-TPHKTNSCANGGSTSVPAGNVASRVTS 55
+ TP T S +G + S G+ S S
Sbjct: 1192 STNTPDSTESTISGSTISGSTGSTESSTMS 1221
Score = 27.5 bits (58), Expect = 2.5
Identities = 24/89 (26%), Positives = 36/89 (40%)
Frame = -3
Query: 324 GSNNTSPSLIRFFPMSTLVVGSRSVPDGGMPRVSTFRNSFFDTVSEQKADTASILSSLSV 145
GS+ + S + ST+ + S G ST S TVS T + S++S
Sbjct: 1043 GSSTEAGSTVSGSSASTVTSSTGSSTSGE----STVSGSTVSTVSGSTGSTITGESTVSG 1098
Query: 144 GNLTPHKTNSCANGGSTSVPAGNVASRVT 58
+ S +G S S +GN S +T
Sbjct: 1099 STESTVTAESTVSGSSVSTVSGNTGSTIT 1127
>U53153-7|AAC69037.1| 1280|Caenorhabditis elegans Hypothetical protein
T19A5.1 protein.
Length = 1280
Score = 29.5 bits (63), Expect = 0.61
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -3
Query: 270 VVGSRSVPDGGMPRVSTFRNSFFDTVSEQKADTASILSS--LSVGNLTP 130
+V S ++PD V N F+D S++ AD ASI+S L +TP
Sbjct: 864 IVESSNIPDASPQLVYHRCNGFYDGFSKKTADYASIVSPFLLVFNTITP 912
>Z68012-4|CAA92018.1| 89|Caenorhabditis elegans Hypothetical
protein T24D5.4 protein.
Length = 89
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 281 CQHWLLGRGVCRMAECRASQHSGTVSSTQYQ 189
C WL G +C+M R H T TQY+
Sbjct: 35 CDWWLTGVVLCKMVFGRVPFHDDTPGGTQYR 65
>U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical
protein C34D4.14 protein.
Length = 2761
Score = 27.9 bits (59), Expect = 1.9
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 7/98 (7%)
Frame = -3
Query: 321 SNNTSPSLIRFFPMSTLVVGSRSVPDGGMPRVSTFRN-----SF-FDTVSEQKADTASIL 160
S +TSP++ +T V S P P STF + F + + AS L
Sbjct: 1622 SKSTSPAIASRLINTTTTVSGTSSPPPPPPSSSTFSSLASGLGFGLNRHKQHNKPAASAL 1681
Query: 159 SSL-SVGNLTPHKTNSCANGGSTSVPAGNVASRVTSII 49
S SV N TP T S +GGS+ G + T+++
Sbjct: 1682 SRFASVKNTTPAGTPS--SGGSSGGAIGKKSMSTTNLV 1717
>Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical
protein F30A10.10 protein.
Length = 1262
Score = 27.1 bits (57), Expect = 3.3
Identities = 17/80 (21%), Positives = 37/80 (46%)
Frame = -3
Query: 285 PMSTLVVGSRSVPDGGMPRVSTFRNSFFDTVSEQKADTASILSSLSVGNLTPHKTNSCAN 106
P + + ++++ D +P V + +Q + + S TP K+++ N
Sbjct: 612 PTKDIDILAKAMEDNALPTVEVPQPELKKRTRQQNGEVKYVYSQR-----TPRKSHNGTN 666
Query: 105 GGSTSVPAGNVASRVTSIIS 46
G ++S V+SRV +++S
Sbjct: 667 GTNSSPQKQPVSSRVAALLS 686
>Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical
protein F30A10.10 protein.
Length = 1262
Score = 27.1 bits (57), Expect = 3.3
Identities = 17/80 (21%), Positives = 37/80 (46%)
Frame = -3
Query: 285 PMSTLVVGSRSVPDGGMPRVSTFRNSFFDTVSEQKADTASILSSLSVGNLTPHKTNSCAN 106
P + + ++++ D +P V + +Q + + S TP K+++ N
Sbjct: 612 PTKDIDILAKAMEDNALPTVEVPQPELKKRTRQQNGEVKYVYSQR-----TPRKSHNGTN 666
Query: 105 GGSTSVPAGNVASRVTSIIS 46
G ++S V+SRV +++S
Sbjct: 667 GTNSSPQKQPVSSRVAALLS 686
>Z49936-3|CAD90174.1| 1000|Caenorhabditis elegans Hypothetical
protein F13B10.1c protein.
Length = 1000
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = +2
Query: 140 FPTDNDDRMEAVSAFCSDTVSKKLFLNVETRGIPPSGTLLDPTTNVDIGKNLIKDG 307
F D+DD + + S S + + + + PP T P TN D+ ++ +G
Sbjct: 89 FELDDDDDLSSPSVPGSPVDPPSISVPLPPKSAPPCPTQPAPLTNGDLYPTILSNG 144
>Z49936-1|CAA90182.1| 930|Caenorhabditis elegans Hypothetical
protein F13B10.1a protein.
Length = 930
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = +2
Query: 140 FPTDNDDRMEAVSAFCSDTVSKKLFLNVETRGIPPSGTLLDPTTNVDIGKNLIKDG 307
F D+DD + + S S + + + + PP T P TN D+ ++ +G
Sbjct: 35 FELDDDDDLSSPSVPGSPVDPPSISVPLPPKSAPPCPTQPAPLTNGDLYPTILSNG 90
>AY834227-1|AAV91313.1| 984|Caenorhabditis elegans Toll and
interleukin 1 receptordomain protein isoform c protein.
Length = 984
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = +2
Query: 140 FPTDNDDRMEAVSAFCSDTVSKKLFLNVETRGIPPSGTLLDPTTNVDIGKNLIKDG 307
F D+DD + + S S + + + + PP T P TN D+ ++ +G
Sbjct: 89 FELDDDDDLSSPSVPGSPVDPPSISVPLPPKSAPPCPTQPAPLTNGDLYPTILSNG 144
>AY834226-1|AAV91312.1| 931|Caenorhabditis elegans Toll and
interleukin 1 receptordomain protein isoform a protein.
Length = 931
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = +2
Query: 140 FPTDNDDRMEAVSAFCSDTVSKKLFLNVETRGIPPSGTLLDPTTNVDIGKNLIKDG 307
F D+DD + + S S + + + + PP T P TN D+ ++ +G
Sbjct: 36 FELDDDDDLSSPSVPGSPVDPPSISVPLPPKSAPPCPTQPAPLTNGDLYPTILSNG 91
>AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical
protein Y69A2AR.31 protein.
Length = 1219
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -1
Query: 134 HRIRQTHVQTVDQPQSQPVTWLAVSLRSSRDSHNQ 30
+R++ T + VD P+ +P S + RDS Q
Sbjct: 724 NRVQSTVEEAVDPPEPEPAMRRTASTKIKRDSFQQ 758
>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 135 TPHKTNSCANGGSTSVPAGN 76
TP+ NSC NGG T P N
Sbjct: 785 TPYPPNSCQNGGVTD-PTNN 803
>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 135 TPHKTNSCANGGSTSVPAGN 76
TP+ NSC NGG T P N
Sbjct: 785 TPYPPNSCQNGGVTD-PTNN 803
>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 135 TPHKTNSCANGGSTSVPAGN 76
TP+ NSC NGG T P N
Sbjct: 785 TPYPPNSCQNGGVTD-PTNN 803
>Z12017-7|CAH19088.1| 856|Caenorhabditis elegans Hypothetical
protein R08D7.6c protein.
Length = 856
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 236 CRASQHSGTVSSTQYQSRKPTPL 168
C H GT +S Q QS + TPL
Sbjct: 458 CHDIDHRGTTNSFQMQSLQKTPL 480
>Z12017-6|CAE47469.1| 734|Caenorhabditis elegans Hypothetical
protein R08D7.6b protein.
Length = 734
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 236 CRASQHSGTVSSTQYQSRKPTPL 168
C H GT +S Q QS + TPL
Sbjct: 461 CHDIDHRGTTNSFQMQSLQKTPL 483
>Z12017-5|CAA78052.2| 859|Caenorhabditis elegans Hypothetical
protein R08D7.6a protein.
Length = 859
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 236 CRASQHSGTVSSTQYQSRKPTPL 168
C H GT +S Q QS + TPL
Sbjct: 461 CHDIDHRGTTNSFQMQSLQKTPL 483
>U50068-5|AAB37734.1| 722|Caenorhabditis elegans Temporarily
assigned gene nameprotein 292 protein.
Length = 722
Score = 25.4 bits (53), Expect = 10.0
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 254 LLDPTTNVDIGKNLIKDGLVL 316
L P+ V+IGK+ + DG++L
Sbjct: 29 LRQPSVTVEIGKHFVFDGMIL 49
>AC091125-8|AAP46267.1| 353|Caenorhabditis elegans Hypothetical
protein Y67D2.1b protein.
Length = 353
Score = 25.4 bits (53), Expect = 10.0
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 29 IDYGNREMIEVTRLATLPAGTEVDPP 106
I+ GNRE++E + +P G + + P
Sbjct: 85 IELGNREIVENIEMTWIPRGKDEEKP 110
>AC091125-7|AAK27890.1| 510|Caenorhabditis elegans Hypothetical
protein Y67D2.1a protein.
Length = 510
Score = 25.4 bits (53), Expect = 10.0
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 29 IDYGNREMIEVTRLATLPAGTEVDPP 106
I+ GNRE++E + +P G + + P
Sbjct: 85 IELGNREIVENIEMTWIPRGKDEEKP 110
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,466,278
Number of Sequences: 27780
Number of extensions: 175773
Number of successful extensions: 613
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -