Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_H16
         (332 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    24   0.56 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   2.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   2.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   3.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   6.8  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    20   6.8  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               20   9.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   9.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   9.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   9.1  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.8 bits (49), Expect = 0.56
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +2

Query: 203 KKLFLNVETRGIPPSGTLLDPTTN 274
           K+L  N++   + P G++LDP+++
Sbjct: 228 KELSPNIKIIAVDPKGSILDPSSD 251


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 81  RLGLRLIHRLHMSLSYAVLNSQQTMTIEWK 170
           +LGLRL   + ++L   +L +   +  EW+
Sbjct: 49  KLGLRLSQLIDLNLKDQILTTNVWLEHEWQ 78


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -3

Query: 168 SILSSLSVGNLTPHKTNSCANGGSTSVPAGNVASRVTSIIS 46
           S  S  + GN++   TN+ +N     +P  ++ S  TS+ S
Sbjct: 713 STQSLTTTGNVSYLTTNNTSNNSQLQIPRASLVS-TTSVKS 752


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +2

Query: 47  EMIEVTRLATLPAGTEVDP 103
           E +E     T P G E++P
Sbjct: 296 ESVETVLTVTAPLGAEIEP 314


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = +3

Query: 81  RLGLRLIHRLHMSLSYAVLNSQQTMTIEWKRCRL 182
           ++GLRL   + ++L   ++ +   +  EW   +L
Sbjct: 49  KMGLRLSQLIDVNLKNQIMTTNVWVEQEWNDYKL 82


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 215 LNVETRGIPPSGTLLDPTTNVDIGKN 292
           LNV +  I   G LL+P  N    KN
Sbjct: 91  LNVISNKIGNGGPLLEPYPNWSWAKN 116


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 8/41 (19%), Positives = 18/41 (43%)
 Frame = +3

Query: 90  LRLIHRLHMSLSYAVLNSQQTMTIEWKRCRLSALILCRRNC 212
           + ++  +++ LS  ++ S     +    C+     LC R C
Sbjct: 2   ISMLRCIYLFLSVILITSYFVTPVMPCNCKAPETALCARRC 42


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 275 HWLLGRGVCRMAEC 234
           H L G GVC+   C
Sbjct: 275 HPLYGHGVCKWPGC 288


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 195 VSEQKADTASILSSLSVGNLTP 130
           V   + DTA   + L +GN  P
Sbjct: 401 VRRSEGDTAQASAELQLGNAPP 422


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 195 VSEQKADTASILSSLSVGNLTP 130
           V   + DTA   + L +GN  P
Sbjct: 401 VRRSEGDTAQASAELQLGNAPP 422


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,792
Number of Sequences: 438
Number of extensions: 2162
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)