Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_H15
         (328 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1189 + 31586991-31587291,31587358-31587397,31587449-315875...    29   0.65 
02_05_1068 + 33862378-33863640                                         27   4.6  
03_01_0440 - 3414811-3415884,3416000-3416037,3416807-3416966           26   8.0  

>04_04_1189 + 31586991-31587291,31587358-31587397,31587449-31587534,
            31587535-31588097,31588250-31589913,31589956-31590066,
            31590152-31591181,31591234-31591406,31591535-31591814,
            31592275-31592331
          Length = 1434

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +1

Query: 79   SLQKLMMQYRLLFLCISLVIPSTYQASTSSGSVE 180
            SLQKL++   L+  C S +  ST Q STS G  E
Sbjct: 953  SLQKLVLINMLILECCSGLTASTVQMSTSQGDKE 986


>02_05_1068 + 33862378-33863640
          Length = 420

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 18/73 (24%), Positives = 32/73 (43%)
 Frame = +3

Query: 81  STETDDAVPFIIFVYIFSYSLNLPSXXXXXXXXXXXXXXQLKLLVNLMQHLLNSTLRSRM 260
           + + DDA   +    I + S+ LP               +L L+V+L   L+NST  + +
Sbjct: 67  NADEDDAASAVSLDTISNDSILLPPEPTSANLASLLRARKLILVVDLDHTLINSTRFAHL 126

Query: 261 ETNMKPSWHLQRT 299
             + K +   +RT
Sbjct: 127 SDDEKANGFTERT 139


>03_01_0440 - 3414811-3415884,3416000-3416037,3416807-3416966
          Length = 423

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -3

Query: 146 VEGITKDIHKNNKRYCIISFCRDHRIILHFI 54
           V G+T        ++C++  C DH + + FI
Sbjct: 347 VTGVTLVSMGGGSKFCVVECCLDHSVSVPFI 377


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,550,114
Number of Sequences: 37544
Number of extensions: 125022
Number of successful extensions: 265
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)