Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_H14
(420 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0091 + 646299-649082 31 0.50
06_01_0458 + 3269069-3269081,3269113-3269741 29 1.1
05_01_0445 + 3547176-3547577,3548625-3549557,3550246-3550524,355... 28 2.7
03_02_0726 + 10722759-10722857,10722969-10723058,10723141-107232... 28 3.5
02_04_0435 + 22912993-22913456,22913847-22914012,22914096-229141... 28 3.5
05_06_0190 - 26260743-26261198,26261261-26261355,26261425-26262181 27 4.6
03_02_0050 + 5272471-5274861 27 4.6
02_04_0115 - 19888252-19888406,19888507-19888573,19888867-198891... 27 4.6
03_05_0064 - 20385290-20385346,20385452-20387133,20387266-203880... 27 6.1
01_06_0599 - 30513858-30514079,30514157-30514588,30514683-30514823 27 6.1
01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650... 27 6.1
08_02_0840 + 21715077-21716962,21717541-21717814,21718265-21718579 27 8.1
08_02_0076 + 11967606-11967905,11969125-11969223,11969813-119741... 27 8.1
07_03_1778 + 29451902-29452166,29452665-29452849,29453504-294536... 27 8.1
07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604... 27 8.1
05_03_0627 - 16342211-16342264,16342332-16342412,16342751-163428... 27 8.1
02_04_0480 - 23274945-23275196,23275558-23275623,23276709-232768... 27 8.1
>02_01_0091 + 646299-649082
Length = 927
Score = 30.7 bits (66), Expect = 0.50
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +3
Query: 243 DFKKYSSTFDNIQSLIKEGKVEEAPASECNETVNELTTAAPNIVRVVT 386
D Y+ D + G V+E PASEC + TTA N RV T
Sbjct: 698 DLNYYTKVQDYTEISFIGGDVDEHPASECKPDIRR-TTAQANDCRVTT 744
>06_01_0458 + 3269069-3269081,3269113-3269741
Length = 213
Score = 29.5 bits (63), Expect = 1.1
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +3
Query: 306 EEAPASECNETVNELTTAAPNIVRVVTLPRSWCKG 410
E+A + ++++ + A N+V++ +LP SWC+G
Sbjct: 155 EKAISVPPSQSMLRIIRTAGNVVKLPSLPSSWCRG 189
>05_01_0445 +
3547176-3547577,3548625-3549557,3550246-3550524,
3550624-3550752,3550813-3550869
Length = 599
Score = 28.3 bits (60), Expect = 2.7
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Frame = +3
Query: 87 LSLDLNNSQDRYITPEYFGHSP---KSRKPPNEKSAHSSKSNVIQ-----NKLSP-QNRF 239
LSL+L + RY+ P + H +S++ N+ S K ++Q ++LS
Sbjct: 253 LSLELEDLSFRYLFPHSYDHIDQWLRSQETENKLLIDSYKEQLLQALKDDDELSQIVQDI 312
Query: 240 SDFKKYSSTFDNIQSLIKEGKVEE 311
S +Y S F ++ L+K+G+ E
Sbjct: 313 SIQGRYKSRFSTMKKLVKDGRKPE 336
>03_02_0726 +
10722759-10722857,10722969-10723058,10723141-10723245,
10723597-10723698,10724721-10724805,10725281-10725365,
10725473-10725517,10725685-10728672,10728839-10729055,
10729193-10729765
Length = 1462
Score = 27.9 bits (59), Expect = 3.5
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Frame = +3
Query: 3 TRPNSRYSIDLCTPNSRISKELTSPKSRLSLDLNNSQDRYITPEYFGHSPKSRKPPNEKS 182
T P+ ++DL S SK +SR +L N D PEY ++ PP K
Sbjct: 584 TNPSEANNVDLGKQQSGSSKS----RSRTALKHGNLVDGIKLPEYSSSETNAQPPPKPKE 639
Query: 183 --AHSSKSNVIQNKLSPQNRFSD 245
A S + V K P F +
Sbjct: 640 LLATSLSATVHDVKRCPDFSFQN 662
>02_04_0435 +
22912993-22913456,22913847-22914012,22914096-22914146,
22914353-22914578,22915275-22915963,22916055-22916408
Length = 649
Score = 27.9 bits (59), Expect = 3.5
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +3
Query: 165 PPNEKSAHSSKSNVIQNKLSPQNRF--SDFKKYSSTFDNIQSLIKEGKVEEAPASECNET 338
PP E+S S + +P F + + S DN SL E ++ +P+S+ N++
Sbjct: 319 PPIEQSNSSLSHGSSKAGDAPLGAFWATQHAQGSQVADNRNSLFDEEPIKPSPSSKHNQS 378
Query: 339 VNELTTAAP 365
+++ +AP
Sbjct: 379 RGDISISAP 387
>05_06_0190 - 26260743-26261198,26261261-26261355,26261425-26262181
Length = 435
Score = 27.5 bits (58), Expect = 4.6
Identities = 19/80 (23%), Positives = 39/80 (48%)
Frame = +3
Query: 138 FGHSPKSRKPPNEKSAHSSKSNVIQNKLSPQNRFSDFKKYSSTFDNIQSLIKEGKVEEAP 317
F H + EK +S+ ++L+P R + +S+F +++S+I+ +E+A
Sbjct: 83 FRHRADLLQKEEEKEDEQVRSSFAMSRLNPAKRIRFSRARTSSFQDLESMIR--SLEDAI 140
Query: 318 ASECNETVNELTTAAPNIVR 377
A + E + L + P + R
Sbjct: 141 A-DTKEFIVFLMSCPPVMYR 159
>03_02_0050 + 5272471-5274861
Length = 796
Score = 27.5 bits (58), Expect = 4.6
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +3
Query: 276 IQSLIKEGKVEEAPASECNETVNELTTAAPNIVRVVTLPRSWCK 407
++SL KEGK+EEA + + E AP+++ TL ++CK
Sbjct: 391 VKSLCKEGKLEEA-LGKLEKIAEE--GLAPDVITYNTLIDAYCK 431
>02_04_0115 -
19888252-19888406,19888507-19888573,19888867-19889101,
19889179-19889255,19889350-19889415,19889517-19889565,
19889651-19889701,19889799-19889851,19889973-19890024,
19890126-19890214,19890308-19890393,19890603-19890659,
19890742-19890919,19891852-19891908,19892209-19892439
Length = 500
Score = 27.5 bits (58), Expect = 4.6
Identities = 24/81 (29%), Positives = 34/81 (41%)
Frame = +3
Query: 3 TRPNSRYSIDLCTPNSRISKELTSPKSRLSLDLNNSQDRYITPEYFGHSPKSRKPPNEKS 182
TR RY +L ++ +P+ D+ S D IT F SP P + K+
Sbjct: 78 TRDADRYGKNLIHAVVGAKQKRKAPEES---DVAESSDCMITSPGFAVSPMLT-PVSGKA 133
Query: 183 AHSSKSNVIQNKLSPQNRFSD 245
+SKS NK PQ S+
Sbjct: 134 VKTSKSKTKNNKAGPQTPTSN 154
>03_05_0064 -
20385290-20385346,20385452-20387133,20387266-20388083,
20388184-20388303,20389036-20389305,20390094-20390269
Length = 1040
Score = 27.1 bits (57), Expect = 6.1
Identities = 24/109 (22%), Positives = 42/109 (38%)
Frame = +3
Query: 42 PNSRISKELTSPKSRLSLDLNNSQDRYITPEYFGHSPKSRKPPNEKSAHSSKSNVIQNKL 221
P+ SKE P + ++ R G++ K +K + K N +N
Sbjct: 391 PSENQSKESCYPNMKDWQSYSHGDVRQSGDNQEGNTKKIKKG----GQNGEKGNYHRNNN 446
Query: 222 SPQNRFSDFKKYSSTFDNIQSLIKEGKVEEAPASECNETVNELTTAAPN 368
P S K ++ D + GK+++AP + V E A+P+
Sbjct: 447 IPTVVCSGSKSNENSEDMKSDEVSNGKLQDAPVTYVENGVKESDNASPS 495
>01_06_0599 - 30513858-30514079,30514157-30514588,30514683-30514823
Length = 264
Score = 27.1 bits (57), Expect = 6.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 264 TFDNIQSLIKEGKVEEAPASECNETV 341
TFD + SL + + +E PA ETV
Sbjct: 33 TFDTVNSLFESERTQEWPAGSLEETV 58
>01_01_0832 -
6500139-6500333,6500610-6500875,6501494-6501815,
6501915-6502156,6502229-6502457,6503020-6503184,
6503279-6503605,6504150-6504191,6504333-6504400,
6504748-6504934,6506249-6506311,6506748-6506790,
6506919-6507019,6507110-6507184,6507359-6507445,
6507593-6507682,6507906-6507992,6508585-6508783,
6509113-6509177,6509502-6509606,6509726-6509871,
6510100-6510224,6510335-6510437,6510482-6510596,
6510734-6510869,6511298-6511387,6511484-6511578,
6511698-6511763,6511868-6511936,6512034-6512147,
6512241-6512448,6512545-6512600,6512818-6513552
Length = 1671
Score = 27.1 bits (57), Expect = 6.1
Identities = 18/82 (21%), Positives = 29/82 (35%)
Frame = +3
Query: 84 RLSLDLNNSQDRYITPEYFGHSPKSRKPPNEKSAHSSKSNVIQNKLSPQNRFSDFKKYSS 263
R+ L + R IT + S P+ + V K PQN
Sbjct: 719 RMELQYSEKNGRNITRMVSYCAFHSTPDPDNVLIVKTPEGVFSTKFLPQNNEKQSGTRLV 778
Query: 264 TFDNIQSLIKEGKVEEAPASEC 329
+N+Q + K+ + PA+ C
Sbjct: 779 RKENLQEKVLPAKISDCPAARC 800
>08_02_0840 + 21715077-21716962,21717541-21717814,21718265-21718579
Length = 824
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 282 SLIKEGKVEEAPASECNETVNELTTAAPNIVRVVT 386
+++ +G + +AP+ E T+NEL + N V VV+
Sbjct: 566 TVMPQGLINKAPSEEVIRTLNELCSDPMNTVFVVS 600
>08_02_0076 + 11967606-11967905,11969125-11969223,11969813-11974124,
11974177-11974211
Length = 1581
Score = 26.6 bits (56), Expect = 8.1
Identities = 34/141 (24%), Positives = 54/141 (38%), Gaps = 8/141 (5%)
Frame = +3
Query: 12 NSRYSIDLCTPNSRISKELTSPKSRLS-LDLNNSQDRYITP-EYFGHSPKSRKPPNEKSA 185
NS IDLC +S+ ++ P L L DRYI E + + K E
Sbjct: 1012 NSLSDIDLCGEHSKFTRFRLKPFGTSDGLSLQIKGDRYIQKIEERLFTLEKLKDLRELEI 1071
Query: 186 HSSKSNVIQNKL-SPQNRFSDFKKYS-----STFDNIQSLIKEGKVEEAPASECNETVNE 347
+S + Q + + + KK+ F L VEE S CN T+ +
Sbjct: 1072 RDYQSVIFQRQFWEGFEQLTSLKKFRVIKCPEIFSTNFELFLPPSVEELELSGCNITLIQ 1131
Query: 348 LTTAAPNIVRVVTLPRSWCKG 410
L+ N+ + + + C+G
Sbjct: 1132 LSQLLVNLHLLKSFKLTNCQG 1152
>07_03_1778 +
29451902-29452166,29452665-29452849,29453504-29453693,
29453990-29454168,29454263-29454314,29454426-29454553,
29454920-29455099,29455209-29455276,29455364-29455506,
29455682-29455743,29455874-29455987,29456180-29456320,
29456680-29456832,29456973-29457026,29457102-29457212,
29457339-29457512,29457600-29457680,29457788-29457886,
29457905-29458057
Length = 843
Score = 26.6 bits (56), Expect = 8.1
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Frame = -3
Query: 337 VSLHSDAGASSTFPSF---INDCMLSNVEEYFLKSENLFCGDSLF*IT 203
+ +H+D F F N C S + E FLK +NL G L +T
Sbjct: 424 LDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELT 471
>07_03_0860 + 22057309-22058453,22059833-22059964,22060328-22060412,
22061666-22061867,22062273-22062344,22062509-22062573,
22062682-22062741,22063033-22064379,22064463-22064607,
22064688-22067442,22068540-22068630,22068655-22068873
Length = 2105
Score = 26.6 bits (56), Expect = 8.1
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Frame = +3
Query: 123 ITPEYFGHSPKSR----KPPNEKSAHSSKSNVIQNKLSPQNRFSDFKKYSS-TFDNIQSL 287
+TP H + + K +E+ A + I NKL+PQN F+K DN+ +L
Sbjct: 1543 VTPMQVMHKAEKKYVVGKVSDEEEAKQRQLKAILNKLTPQNFEKLFEKVKEVNIDNVATL 1602
>05_03_0627 -
16342211-16342264,16342332-16342412,16342751-16342849,
16343660-16343770,16343964-16344116,16344741-16344881,
16345456-16345513,16345852-16345967,16346292-16346405,
16346496-16346557,16348788-16348930,16349030-16349097,
16349200-16349379,16349835-16350013,16350447-16350636,
16350920-16350978,16351421-16351574,16352133-16352158,
16352567-16353014
Length = 811
Score = 26.6 bits (56), Expect = 8.1
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Frame = -3
Query: 337 VSLHSDAGASSTFPSF---INDCMLSNVEEYFLKSENLFCGDSLF*IT 203
+ +H+D F F N C S + E FLK +NL G L +T
Sbjct: 443 LDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELT 490
>02_04_0480 -
23274945-23275196,23275558-23275623,23276709-23276851,
23276947-23277063,23277219-23278683,23279561-23280730
Length = 1070
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/53 (22%), Positives = 25/53 (47%)
Frame = +3
Query: 105 NSQDRYITPEYFGHSPKSRKPPNEKSAHSSKSNVIQNKLSPQNRFSDFKKYSS 263
+S+D + P G SP+S++P A N++ ++ + D ++ S
Sbjct: 508 DSEDIHDGPNVSGESPRSKEPKITVDAEIGTRNLVAKSINAASETQDSERVES 560
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,881,089
Number of Sequences: 37544
Number of extensions: 179368
Number of successful extensions: 682
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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