Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_H14
         (420 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            24   2.6  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            24   2.6  
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    23   4.5  
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    23   4.5  
AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic acetylch...    22   7.9  

>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 66   LTSPKSRLSLDLNNSQDRYITPEYFGHSP 152
            L  PKS  S+   N + R +  EY  H P
Sbjct: 2363 LIGPKSNFSMTAINQELRDLLSEYASHLP 2391


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 66   LTSPKSRLSLDLNNSQDRYITPEYFGHSP 152
            L  PKS  S+   N + R +  EY  H P
Sbjct: 2364 LIGPKSNFSMTAINQELRDLLSEYASHLP 2392


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 248 EIRESVLRRQFVLNNVTFGR 189
           E+R    RR+F+  N TF R
Sbjct: 420 ELRVKAWRREFLSKNATFSR 439


>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 99  LNNSQDRYITPE 134
           +NN QD ++TPE
Sbjct: 159 MNNGQDTFVTPE 170


>AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 8 protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +3

Query: 189 SSKSNVIQNKL--SPQNRFSDFKKYSSTFDNIQSLIKEGKVE 308
           S+ SN   N++  S  +   +FK+   +FDNI   +  G VE
Sbjct: 373 STPSNGYTNEIEMSVSDFPGEFKEGGDSFDNIGVNLSHGSVE 414


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 396,896
Number of Sequences: 2352
Number of extensions: 7730
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 34632603
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)