Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_H14
(420 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical pr... 28 2.4
AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical ... 28 2.4
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 28 3.1
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 28 3.1
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 28 3.1
Z81504-1|CAB04116.1| 426|Caenorhabditis elegans Hypothetical pr... 27 4.1
U80840-1|AAK68304.1| 498|Caenorhabditis elegans Hypothetical pr... 27 5.5
AC006757-3|AAF60541.2| 916|Caenorhabditis elegans Hypothetical ... 27 5.5
Z70207-5|CAA94127.2| 914|Caenorhabditis elegans Hypothetical pr... 27 7.2
U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical pr... 27 7.2
DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determini... 27 7.2
AF316542-1|AAG50270.1| 914|Caenorhabditis elegans serine/threon... 27 7.2
AF036700-2|AAB88365.1| 550|Caenorhabditis elegans Hypothetical ... 27 7.2
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 27 7.2
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 27 7.2
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 27 7.2
Z92830-7|CAB07360.1| 659|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z72514-9|CAA96680.3| 449|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z68336-6|CAE17801.1| 204|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z68001-3|CAO78709.1| 449|Caenorhabditis elegans Hypothetical pr... 26 9.5
U41550-4|AAP31434.3| 412|Caenorhabditis elegans Hypothetical pr... 26 9.5
>Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical
protein K02B12.5 protein.
Length = 1204
Score = 28.3 bits (60), Expect = 2.4
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +3
Query: 81 SRLSLDLNNSQDRYITPEYFGHSPKSRKPPNE---KSAHSSKSNVIQNKLSPQNRFSDFK 251
SR + NNS + T + S ++ KPPN +AHS++ ++Q L R
Sbjct: 713 SRKRRNSNNSDNSSNTSKRKQRSEENIKPPNSTPPTTAHSNRKRLVQPSLITSKRVQRQN 772
Query: 252 KYSSTFDNIQSLI 290
SS N ++ I
Sbjct: 773 SSSSLTSNPRNSI 785
>AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical
protein Y45F3A.8 protein.
Length = 404
Score = 28.3 bits (60), Expect = 2.4
Identities = 18/93 (19%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Frame = +3
Query: 12 NSRYSIDLCTPNSRISKELTSPKSRLSLDLNNSQDRYITPEYFGHSPKSRKPPNEKSAHS 191
NS ++ + +++ S E T+P + + L +P+ P+SR P + +S H+
Sbjct: 169 NSSFTGNATAASNQNSTESTNPSTIIDLKAILQSTGRTSPQTTTSRPRSRSPRSSESRHN 228
Query: 192 SKSNV-IQNKLSPQNRFSDFKKYSSTFDNIQSL 287
+++ + + + R K+ +T D + +
Sbjct: 229 ETTSITLPSSFNSTVRKLTLKELMTTRDTMPKI 261
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 27.9 bits (59), Expect = 3.1
Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 8/129 (6%)
Frame = +3
Query: 6 RPNSRYSI-DLCTPNSRISKELTSPKSRLSLDLNNSQDRYITPEYFGHSPKSRKPPNEKS 182
R R+ I D+C N ++ E +S +D + S + HSP + P
Sbjct: 1012 RNEKRHPITDICLKNECLTGEHDCDRSARCIDTDESYICACQSGFIDHSPNPSERPGRVC 1071
Query: 183 AHSSKSNVIQNK-LSPQNRFSDFKKYSSTFDNIQSLIKEGKVEEAPASE------CNETV 341
+QN+ L NR S + T + K G V+ +P + C E V
Sbjct: 1072 V------ALQNECLDGSNRCSPNALCTDTEEGYVCRCKSGFVDYSPNPQTFPGMVCKELV 1125
Query: 342 NELTTAAPN 368
NE T N
Sbjct: 1126 NECTNPRLN 1134
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 27.9 bits (59), Expect = 3.1
Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 8/129 (6%)
Frame = +3
Query: 6 RPNSRYSI-DLCTPNSRISKELTSPKSRLSLDLNNSQDRYITPEYFGHSPKSRKPPNEKS 182
R R+ I D+C N ++ E +S +D + S + HSP + P
Sbjct: 1596 RNEKRHPITDICLKNECLTGEHDCDRSARCIDTDESYICACQSGFIDHSPNPSERPGRVC 1655
Query: 183 AHSSKSNVIQNK-LSPQNRFSDFKKYSSTFDNIQSLIKEGKVEEAPASE------CNETV 341
+QN+ L NR S + T + K G V+ +P + C E V
Sbjct: 1656 V------ALQNECLDGSNRCSPNALCTDTEEGYVCRCKSGFVDYSPNPQTFPGMVCKELV 1709
Query: 342 NELTTAAPN 368
NE T N
Sbjct: 1710 NECTNPRLN 1718
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 27.9 bits (59), Expect = 3.1
Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 8/129 (6%)
Frame = +3
Query: 6 RPNSRYSI-DLCTPNSRISKELTSPKSRLSLDLNNSQDRYITPEYFGHSPKSRKPPNEKS 182
R R+ I D+C N ++ E +S +D + S + HSP + P
Sbjct: 1012 RNEKRHPITDICLKNECLTGEHDCDRSARCIDTDESYICACQSGFIDHSPNPSERPGRVC 1071
Query: 183 AHSSKSNVIQNK-LSPQNRFSDFKKYSSTFDNIQSLIKEGKVEEAPASE------CNETV 341
+QN+ L NR S + T + K G V+ +P + C E V
Sbjct: 1072 V------ALQNECLDGSNRCSPNALCTDTEEGYVCRCKSGFVDYSPNPQTFPGMVCKELV 1125
Query: 342 NELTTAAPN 368
NE T N
Sbjct: 1126 NECTNPRLN 1134
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.9 bits (59), Expect = 3.1
Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 8/129 (6%)
Frame = +3
Query: 6 RPNSRYSI-DLCTPNSRISKELTSPKSRLSLDLNNSQDRYITPEYFGHSPKSRKPPNEKS 182
R R+ I D+C N ++ E +S +D + S + HSP + P
Sbjct: 1596 RNEKRHPITDICLKNECLTGEHDCDRSARCIDTDESYICACQSGFIDHSPNPSERPGRVC 1655
Query: 183 AHSSKSNVIQNK-LSPQNRFSDFKKYSSTFDNIQSLIKEGKVEEAPASE------CNETV 341
+QN+ L NR S + T + K G V+ +P + C E V
Sbjct: 1656 V------ALQNECLDGSNRCSPNALCTDTEEGYVCRCKSGFVDYSPNPQTFPGMVCKELV 1709
Query: 342 NELTTAAPN 368
NE T N
Sbjct: 1710 NECTNPRLN 1718
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 27.9 bits (59), Expect = 3.1
Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 8/129 (6%)
Frame = +3
Query: 6 RPNSRYSI-DLCTPNSRISKELTSPKSRLSLDLNNSQDRYITPEYFGHSPKSRKPPNEKS 182
R R+ I D+C N ++ E +S +D + S + HSP + P
Sbjct: 1596 RNEKRHPITDICLKNECLTGEHDCDRSARCIDTDESYICACQSGFIDHSPNPSERPGRVC 1655
Query: 183 AHSSKSNVIQNK-LSPQNRFSDFKKYSSTFDNIQSLIKEGKVEEAPASE------CNETV 341
+QN+ L NR S + T + K G V+ +P + C E V
Sbjct: 1656 V------ALQNECLDGSNRCSPNALCTDTEEGYVCRCKSGFVDYSPNPQTFPGMVCKELV 1709
Query: 342 NELTTAAPN 368
NE T N
Sbjct: 1710 NECTNPRLN 1718
>Z81504-1|CAB04116.1| 426|Caenorhabditis elegans Hypothetical
protein F15H9.1 protein.
Length = 426
Score = 27.5 bits (58), Expect = 4.1
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Frame = +3
Query: 60 KELTSPKSRLSLDLNNSQDRYITPEYFGHSPKSRKPPNEK--SAHSSKSNVIQNKLSPQN 233
K TS S +L +N++ + S PN + S SS N + +S
Sbjct: 289 KTTTSIPSTSTLQINHTTGSTVNSTTRMISSTIPSTPNLQINSTTSSIQNSTTSMISSTI 348
Query: 234 RFSDFKKYSSTFDNIQSLIKEGKVEEAPASECNETVNE 347
+ SST + ++ E ++EE P+ E +E V+E
Sbjct: 349 SSTSSNSTSSTINVPKTAAPEEEIEEGPSEEKDENVDE 386
>U80840-1|AAK68304.1| 498|Caenorhabditis elegans Hypothetical
protein F08D12.6 protein.
Length = 498
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 66 LTSPKSRLSLDLNNSQDRYITPEYFGHSPKSRKPPNEK 179
+T PK+ L +NN Q + IT YF P+ PN K
Sbjct: 334 VTVPKTMLENCINNDQHKKIT--YFSLFPERHLMPNHK 369
>AC006757-3|AAF60541.2| 916|Caenorhabditis elegans Hypothetical
protein Y40C7B.1 protein.
Length = 916
Score = 27.1 bits (57), Expect = 5.5
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Frame = +3
Query: 78 KSRLSLDLN-NSQDRYITPEYF----GHSPKSRKPPNEKSAHSSKSNVIQ---NKLSPQN 233
KS +S++++ N+QD + E G K K N +++ S I+ NK++ ++
Sbjct: 619 KSDISIEVHANNQDSTMPHEILDDVEGFFGKCIKESNIETSSLKVSKKIEGSGNKINKKS 678
Query: 234 RFSDFKKYSSTFDNIQSLIKEG 299
+ SD KK S +N ++K G
Sbjct: 679 KKSDDKKISKANNNFLKVLKSG 700
>Z70207-5|CAA94127.2| 914|Caenorhabditis elegans Hypothetical protein
F15A2.6a protein.
Length = 914
Score = 26.6 bits (56), Expect = 7.2
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +3
Query: 39 TPNSRISKELTSPKSRLSLDLNNSQDRYITPEYFGHSPKSRKPPNEKSAHSSKS 200
T +S + P S S +N+ D PEY S S P N+ S S +S
Sbjct: 849 TASSSSASNRYGPSSSSSGSYSNNADYSYHPEYSQRSNGSSAPKNQYSPGSQRS 902
>U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical
protein F52C9.7 protein.
Length = 451
Score = 26.6 bits (56), Expect = 7.2
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = +3
Query: 48 SRISKELTSPKSRLSLDLNNSQDRYITPEYFGHSPKSRKPPNEKSAHSSKSNVIQNKLSP 227
S+ K+ K S +S +R SPK R+ P+EK S+S + SP
Sbjct: 126 SKKDKKKKKKKRSSSSSDESSDERVERKRRRSPSPKRRRRPSEKPRKRSRSPRRERPRSP 185
Query: 228 QNRFSDFKKYS 260
+ + +K S
Sbjct: 186 KRSREESRKLS 196
>DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determining
protein MOG-3 protein.
Length = 451
Score = 26.6 bits (56), Expect = 7.2
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = +3
Query: 48 SRISKELTSPKSRLSLDLNNSQDRYITPEYFGHSPKSRKPPNEKSAHSSKSNVIQNKLSP 227
S+ K+ K S +S +R SPK R+ P+EK S+S + SP
Sbjct: 126 SKKDKKKKKKKRSSSSSDESSDERVERKRRRSPSPKRRRRPSEKPRKRSRSPRRERPRSP 185
Query: 228 QNRFSDFKKYS 260
+ + +K S
Sbjct: 186 KRSREESRKLS 196
>AF316542-1|AAG50270.1| 914|Caenorhabditis elegans serine/threonine
kinase SAD-1 protein.
Length = 914
Score = 26.6 bits (56), Expect = 7.2
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +3
Query: 39 TPNSRISKELTSPKSRLSLDLNNSQDRYITPEYFGHSPKSRKPPNEKSAHSSKS 200
T +S + P S S +N+ D PEY S S P N+ S S +S
Sbjct: 849 TASSSSASNRYGPSSSSSGSYSNNADYSYHPEYSQRSNGSSAPKNQYSPGSQRS 902
>AF036700-2|AAB88365.1| 550|Caenorhabditis elegans Hypothetical
protein M04G7.2 protein.
Length = 550
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +3
Query: 156 SRKPPNEKSAHSSKSNVIQNKLSPQNRFSDFKKYSSTFDNIQSLIKEGKVEEAPASECN 332
++KP + +SKS + +K SP + + KK S ++ + K PA+ N
Sbjct: 13 TKKPEASNGSKNSKSTFVNSK-SPNQKRREVKKSDSDTESSHKNTRRTKPVPVPAASSN 70
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -2
Query: 293 LYQRLYVVKRGRILFEIRESVLRRQF 216
+ R+YV G I FEIRE +LRR F
Sbjct: 100 IMSRIYV---GSISFEIREDMLRRAF 122
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -2
Query: 293 LYQRLYVVKRGRILFEIRESVLRRQF 216
+ R+YV G I FEIRE +LRR F
Sbjct: 100 IMSRIYV---GSISFEIREDMLRRAF 122
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -2
Query: 293 LYQRLYVVKRGRILFEIRESVLRRQF 216
+ R+YV G I FEIRE +LRR F
Sbjct: 100 IMSRIYV---GSISFEIREDMLRRAF 122
>Z92830-7|CAB07360.1| 659|Caenorhabditis elegans Hypothetical
protein F11A5.8 protein.
Length = 659
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 156 SRKPPNEKSAHSSKSNVIQNKLSPQNRFSDFK 251
+RKP +S H KS+V ++ ++ + RFS K
Sbjct: 568 TRKPMELESLHLKKSDVDEDWMTARERFSRIK 599
>Z72514-9|CAA96680.3| 449|Caenorhabditis elegans Hypothetical
protein T10B10.8 protein.
Length = 449
Score = 26.2 bits (55), Expect = 9.5
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = -3
Query: 406 LHQDLGNVTTLTIFGAAVVSSFTVSL-HSDAGASSTFPSFINDCMLSNVEEYFLKSENLF 230
+H DL + T I SF S HSD S F N+ + ++E++ +E+
Sbjct: 114 VHLDLDILPTRDISTLFECGSFCASFRHSDMFNSGVFVLKTNETVFHDMEQHVASAESYD 173
Query: 229 CGDSLF 212
GD F
Sbjct: 174 GGDQGF 179
>Z68336-6|CAE17801.1| 204|Caenorhabditis elegans Hypothetical
protein F22B3.9 protein.
Length = 204
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +3
Query: 42 PNSRIS--KELTSPKSRLSLDLNNSQDRYITPEYFG---HSPKSRKPPNEKSAHSSKSNV 206
P+ R S ++ S +++ +++S ++P + S + PPNE S SKS +
Sbjct: 96 PDRRTSFASTMSDTNSSITIPMSSSYQNLLSPMWSTMKYSSDDNETPPNEPSPRRSKSAL 155
Query: 207 IQ 212
IQ
Sbjct: 156 IQ 157
>Z68001-3|CAO78709.1| 449|Caenorhabditis elegans Hypothetical
protein T10B10.8 protein.
Length = 449
Score = 26.2 bits (55), Expect = 9.5
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = -3
Query: 406 LHQDLGNVTTLTIFGAAVVSSFTVSL-HSDAGASSTFPSFINDCMLSNVEEYFLKSENLF 230
+H DL + T I SF S HSD S F N+ + ++E++ +E+
Sbjct: 114 VHLDLDILPTRDISTLFECGSFCASFRHSDMFNSGVFVLKTNETVFHDMEQHVASAESYD 173
Query: 229 CGDSLF 212
GD F
Sbjct: 174 GGDQGF 179
>U41550-4|AAP31434.3| 412|Caenorhabditis elegans Hypothetical
protein R04A9.5 protein.
Length = 412
Score = 26.2 bits (55), Expect = 9.5
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +3
Query: 252 KYSSTFDNIQSLIKEGKVE 308
+Y + FDN +++ K+GK+E
Sbjct: 228 RYKTIFDNFETIRKDGKIE 246
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,943,231
Number of Sequences: 27780
Number of extensions: 179838
Number of successful extensions: 757
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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