Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_H13
         (250 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    25   1.9  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    25   1.9  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    23   4.5  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    23   5.9  
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    23   5.9  
SPCC736.10c |mrps8||mitochondrial ribosomal protein subunit S8|S...    23   5.9  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   5.9  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    23   7.8  
SPBC13G1.06c |isd11||iron sulfur cluster assembly protein Isd11|...    23   7.8  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    23   7.8  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    23   7.8  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    23   7.8  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    23   7.8  

>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +1

Query: 97  FFDLPIYHQLLFFCAIYISCVSI*TASVAQLYCGATVVLRSRVLSP 234
           F+ +     L+F CA+++S  S     +    C +  +L  R+  P
Sbjct: 510 FWRMQPLEALIFICAVFVSVFSSIENGIYTAVCLSAALLLFRIAKP 555


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 57  HWQFFNDVLKTARIFRFTYLPSASFFLCHL 146
           HW  +  +L+T R+F + YLP+  F +  L
Sbjct: 624 HWAPY--ILETDRVFLYHYLPALYFGIAAL 651


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 80 NIIKKLPVTLVPNSSSPGIHYSR 12
          N +KKL  T V N+S+P   Y +
Sbjct: 12 NPLKKLTSTAVVNNSTPSAQYRK 34


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 140 PSILAVYLYRLPRWRSC 190
           PS+  V+ Y+ P W  C
Sbjct: 425 PSVKKVHHYQYPNWSDC 441


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 12/58 (20%), Positives = 23/58 (39%)
 Frame = +1

Query: 55  VTGNFLMMFLKQRGFFDLPIYHQLLFFCAIYISCVSI*TASVAQLYCGATVVLRSRVL 228
           VT   ++ F    GF    +Y ++ +    Y +C+   +      +CG   +    VL
Sbjct: 200 VTRFQIVQFFADLGFIYFAVYTEVAYRLKFYKACMGHCSGHPLAAFCGLATISSYLVL 257


>SPCC736.10c |mrps8||mitochondrial ribosomal protein subunit
           S8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 142 WHRKKEADGK*VNRKIRAVLRTSLKNCQ*PSCRIQAARGSTI 17
           W   K  +GK V   IRAV + S K    PS  +Q A+G  +
Sbjct: 71  WLGLKYFEGKPVLHYIRAVSKPSRKVNLTPSELLQFAKGRKV 112


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 95  PRCFKNIIKKLPVTLVPNS 39
           PRC   ++KK P  +  NS
Sbjct: 364 PRCMLTLLKKKPTLVTSNS 382


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 25  IPGLLEFGTRVTGNFLMMFLKQRGFFDL-PIYHQLL 129
           +PG + F     G F   +L+ + FFDL P + +LL
Sbjct: 79  LPGEVVFDEVHFGKFASYYLQGKYFFDLHPPFAKLL 114


>SPBC13G1.06c |isd11||iron sulfur cluster assembly protein
           Isd11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 102

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 6/17 (35%), Positives = 14/17 (82%)
 Frame = +3

Query: 63  QFFNDVLKTARIFRFTY 113
           + + ++LKT+++F +TY
Sbjct: 10  RLYRNILKTSKLFPYTY 26


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 86   FKNIIKKLPVTLVPNSS 36
            F+ ++ KLP   +PN S
Sbjct: 1875 FRQVVDKLPTVEIPNES 1891


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 241 PDPGIEPETSERQSHRNTTAPPRQSI 164
           PD   E E S  +S+++  + PR S+
Sbjct: 262 PDASFELERSVSRSYQSPASTPRSSV 287


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 103 DLPIYHQLLFFC 138
           DLP++ Q LFFC
Sbjct: 710 DLPMHMQRLFFC 721


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 46  GTRVTGNFLMMFLKQRGFFDLPIYHQLL 129
           GTRV+G+F   F     FFDL  +  LL
Sbjct: 221 GTRVSGDFDEDFPTGTVFFDLESHLPLL 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,047,930
Number of Sequences: 5004
Number of extensions: 18504
Number of successful extensions: 47
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)