Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_H13
         (250 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0581 - 9617039-9617936,9618057-9618502,9618985-9619071,961...    28   1.2  
03_02_0270 - 7011363-7012302,7013237-7013640,7014264-7014333,701...    27   2.1  
12_02_0291 + 16951154-16952740                                         27   2.8  
06_03_1290 - 29023265-29023469,29023762-29023983,29024097-29025262     25   6.4  
10_08_0838 - 20927020-20927207,20927288-20927491,20927654-209282...    25   8.5  
03_02_0821 - 11519840-11519989,11520333-11520476,11520556-115207...    25   8.5  

>03_02_0581 -
           9617039-9617936,9618057-9618502,9618985-9619071,
           9619276-9619416,9620220-9620411,9620491-9620652,
           9621116-9621199,9621329-9621706
          Length = 795

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 72  NDVLKT-ARIFRFTYLPSASFFLCHLY*LCIYIDCLGGAVVLRCDCRSEVSGSI 230
           ND +K+ + I  F   P A  F+      C+ ++C  G+V +R +C    SGSI
Sbjct: 728 NDEVKSCSTIIPFYATPMACSFVLRT---CLVMECPYGSVSIRQECNRGPSGSI 778


>03_02_0270 -
           7011363-7012302,7013237-7013640,7014264-7014333,
           7014835-7015331,7015959-7016283,7018060-7018292
          Length = 822

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/22 (40%), Positives = 16/22 (72%), Gaps = 3/22 (13%)
 Frame = +1

Query: 109 PIYHQLL---FFCAIYISCVSI 165
           P+Y+  +   FFC +Y+SC++I
Sbjct: 260 PVYYSFMCYPFFCNLYLSCITI 281


>12_02_0291 + 16951154-16952740
          Length = 528

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 110 GKSKNPRCFKNIIKKLPVTLVPNSSSPGI 24
           G++  PRCFK +  K    LV NS  P +
Sbjct: 140 GEADKPRCFKLVFHKRHRQLVLNSYLPSV 168


>06_03_1290 - 29023265-29023469,29023762-29023983,29024097-29025262
          Length = 530

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +1

Query: 55  VTGNFLMMFLKQRGFFDLPIYHQLLFFCAIYISCVSI*TASVAQLYCGATVVLRSRVLSP 234
           + G+ L+MFLK       P Y  +LF     ++  S+ T  +  L     VV+   +L  
Sbjct: 53  ILGSVLLMFLKPSNPEFRPGYIDMLFLSTSALTLSSLITIEMEVLSSSQIVVITLLMLLG 112

Query: 235 GRV 243
           G V
Sbjct: 113 GEV 115


>10_08_0838 -
           20927020-20927207,20927288-20927491,20927654-20928297,
           20928549-20928788,20928884-20928978,20929087-20929434,
           20929824-20930042,20930422-20930487,20931191-20931362,
           20931456-20931703,20931933-20932073,20932238-20932330,
           20932421-20932471,20933571-20933693,20933793-20934035,
           20934131-20934211,20935245-20935340,20935535-20936320,
           20936443-20937012,20937322-20937427,20938102-20938206,
           20938311-20938432,20939321-20939413,20940081-20940104
          Length = 1685

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 110 GKSKNPRCFKNIIKKLPVTLVPNSSSPGIHYS 15
           G  ++P    N+ K+L  TL    SSP  HY+
Sbjct: 629 GHDRSPAAEANLRKQLEQTLAGEPSSPLHHYN 660


>03_02_0821 -
           11519840-11519989,11520333-11520476,11520556-11520754,
           11521309-11521412,11521488-11521598,11521653-11521771,
           11521858-11522002,11522516-11522568,11522676-11522721,
           11522818-11522963,11523691-11523760,11524930-11525083,
           11525186-11525307,11525612-11525835,11526317-11526371,
           11526793-11526972
          Length = 673

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 88  QRGFFDLPIYHQLLFFCAI-YISCVSI*TASVAQLYCGAT 204
           +RG  D  ++H L+  CA+  +  V + T   AQL   A+
Sbjct: 4   RRGRLDSSLFHMLVLVCALSQVLFVGLVTGQTAQLSVDAS 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,398,725
Number of Sequences: 37544
Number of extensions: 133611
Number of successful extensions: 309
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)