Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_H13
         (250 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81504-4|CAB04118.1|  314|Caenorhabditis elegans Hypothetical pr...    29   0.58 
Z81504-3|CAB04117.2|  349|Caenorhabditis elegans Hypothetical pr...    29   0.58 
Z50806-5|CAB60297.2| 1209|Caenorhabditis elegans Hypothetical pr...    28   0.76 
Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical pr...    28   0.76 
Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical pr...    28   0.76 
M13235-1|AAA28129.1|  552|Caenorhabditis elegans protein ( C.ele...    28   0.76 
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p...    27   1.3  
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p...    27   1.3  
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr...    27   1.3  
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr...    27   1.3  
Z48230-3|CAA88263.1|  515|Caenorhabditis elegans Hypothetical pr...    27   1.3  
Z48006-6|CAA88051.1|  515|Caenorhabditis elegans Hypothetical pr...    27   1.3  
U80027-16|AAC48128.2|  399|Caenorhabditis elegans Hypothetical p...    27   2.3  
Z78413-12|CAB01666.3|  448|Caenorhabditis elegans Hypothetical p...    26   4.1  
Z78411-5|CAB01647.3|  448|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z48584-6|CAA88476.1|  280|Caenorhabditis elegans Hypothetical pr...    26   4.1  
U41110-1|AAA82415.1|  506|Caenorhabditis elegans Hypothetical pr...    26   4.1  
U97012-4|AAK39148.1|  340|Caenorhabditis elegans Serpentine rece...    25   7.1  

>Z81504-4|CAB04118.1|  314|Caenorhabditis elegans Hypothetical
           protein F15H9.4 protein.
          Length = 314

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 89  SADFSIYLFTISFFFSVPSILAVYLYR 169
           S+  SI ++T  F F VPS L  ++YR
Sbjct: 89  SSHLSITIYTFIFSFEVPSTLLCFIYR 115


>Z81504-3|CAB04117.2|  349|Caenorhabditis elegans Hypothetical
           protein F15H9.3 protein.
          Length = 349

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 89  SADFSIYLFTISFFFSVPSILAVYLYR 169
           S+  SI ++T  F F VPS L  ++YR
Sbjct: 89  SSHLSITIYTFIFSFEVPSTLLCFIYR 115


>Z50806-5|CAB60297.2| 1209|Caenorhabditis elegans Hypothetical
           protein M79.1c protein.
          Length = 1209

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 192 IQLRHRGSLYRYTANIDGTEK 130
           I +RH G ++ Y  N+D TEK
Sbjct: 215 ISVRHDGRVFHYRINVDNTEK 235


>Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical
           protein M79.1b protein.
          Length = 1214

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 192 IQLRHRGSLYRYTANIDGTEK 130
           I +RH G ++ Y  N+D TEK
Sbjct: 220 ISVRHDGRVFHYRINVDNTEK 240


>Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical
           protein M79.1a protein.
          Length = 1224

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 192 IQLRHRGSLYRYTANIDGTEK 130
           I +RH G ++ Y  N+D TEK
Sbjct: 230 ISVRHDGRVFHYRINVDNTEK 250


>M13235-1|AAA28129.1|  552|Caenorhabditis elegans protein (
           C.elegans DNA homologousto the v-abl oncogene. ).
          Length = 552

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 192 IQLRHRGSLYRYTANIDGTEK 130
           I +RH G ++ Y  N+D TEK
Sbjct: 81  ISVRHDGRVFHYRINVDNTEK 101


>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
           protein ZK617.1b protein.
          Length = 7158

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 226 EPETSERQSHRNTTAPPRQS 167
           EP+ SERQ  + +TA PR S
Sbjct: 207 EPDPSERQERKRSTASPRPS 226


>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
           protein ZK617.1a protein.
          Length = 6839

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 226 EPETSERQSHRNTTAPPRQS 167
           EP+ SERQ  + +TA PR S
Sbjct: 207 EPDPSERQERKRSTASPRPS 226


>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical
           protein ZK617.1b protein.
          Length = 7158

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 226 EPETSERQSHRNTTAPPRQS 167
           EP+ SERQ  + +TA PR S
Sbjct: 207 EPDPSERQERKRSTASPRPS 226


>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical
           protein ZK617.1a protein.
          Length = 6839

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 226 EPETSERQSHRNTTAPPRQS 167
           EP+ SERQ  + +TA PR S
Sbjct: 207 EPDPSERQERKRSTASPRPS 226


>Z48230-3|CAA88263.1|  515|Caenorhabditis elegans Hypothetical
           protein F19C6.4a protein.
          Length = 515

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 66  FFNDVLKTARIFRFTY 113
           FF D+LKT++ F FTY
Sbjct: 498 FFKDLLKTSKSFNFTY 513


>Z48006-6|CAA88051.1|  515|Caenorhabditis elegans Hypothetical
           protein F19C6.4a protein.
          Length = 515

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 66  FFNDVLKTARIFRFTY 113
           FF D+LKT++ F FTY
Sbjct: 498 FFKDLLKTSKSFNFTY 513


>U80027-16|AAC48128.2|  399|Caenorhabditis elegans Hypothetical
           protein T28A11.20 protein.
          Length = 399

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +3

Query: 66  FFNDVLKTARIFRFTY 113
           FF DVL TA  F FTY
Sbjct: 382 FFKDVLNTAERFNFTY 397


>Z78413-12|CAB01666.3|  448|Caenorhabditis elegans Hypothetical
           protein F02D8.4 protein.
          Length = 448

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -3

Query: 86  FKNIIKKLPVTLVPNSSSPGIHYSR 12
           ++N++  + + +VPN++  G  YSR
Sbjct: 199 YRNLLDSVQLVVVPNTNPDGYEYSR 223


>Z78411-5|CAB01647.3|  448|Caenorhabditis elegans Hypothetical
           protein F02D8.4 protein.
          Length = 448

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -3

Query: 86  FKNIIKKLPVTLVPNSSSPGIHYSR 12
           ++N++  + + +VPN++  G  YSR
Sbjct: 199 YRNLLDSVQLVVVPNTNPDGYEYSR 223


>Z48584-6|CAA88476.1|  280|Caenorhabditis elegans Hypothetical
           protein ZK1321.3 protein.
          Length = 280

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 72  NDVLKTARIFRFTYLPSASFFLCHLY*LCIYIDCLGGAVVL 194
           N ++ TAR++    + ++SFF+  LY  C  +  L GA V+
Sbjct: 215 NPIVATARLYGCRGIDNSSFFI--LYWFCPVLGWLTGAYVV 253


>U41110-1|AAA82415.1|  506|Caenorhabditis elegans Hypothetical
           protein ZK682.2 protein.
          Length = 506

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +3

Query: 120 SASFFLCHLY*LCIYIDCL--GGAVVLRCDCRSEVSGSIPG 236
           SASF +   + L    DC   G A+ L C     VSG IPG
Sbjct: 358 SASFGIAICFGLLCLCDCSQRGAAIFLICLAMCFVSGYIPG 398


>U97012-4|AAK39148.1|  340|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 16 protein.
          Length = 340

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 94  GFFDLPIYHQLLFFCAIYISCVS 162
           G F   +Y  L+F CAI++  +S
Sbjct: 266 GLFQGQVYEHLVFSCAIFMPVIS 288


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,046,744
Number of Sequences: 27780
Number of extensions: 112294
Number of successful extensions: 267
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 12,740,198
effective HSP length: 62
effective length of database: 11,017,838
effective search space used: 220356760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)