Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_H12
         (483 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924...    44   9e-05
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379...    39   0.002
07_03_1327 + 25833927-25834391,25834943-25835340,25835395-25836331     29   2.0  
01_07_0229 + 42161770-42164562                                         28   3.4  
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251     27   6.0  
10_08_0974 + 21969713-21971914                                         27   7.9  

>02_04_0433 -
           22891261-22891509,22892181-22892301,22892405-22892496,
           22892692-22892755,22892855-22892920,22893102-22893193,
           22893991-22894050,22894181-22894270,22894484-22894613,
           22895066-22895157,22895299-22895373,22895663-22895754,
           22896496-22896586,22897541-22897574,22897745-22897791,
           22899110-22899209,22899300-22899436,22900837-22901015,
           22901146-22901188,22901264-22901297,22901839-22901948,
           22902043-22902224,22903062-22903168,22903266-22903480
          Length = 833

 Score = 43.6 bits (98), Expect = 9e-05
 Identities = 33/82 (40%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
 Frame = +2

Query: 251 KNGGTRTVLLK----SRKSFYPTQD-KIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGR 415
           KNGGT     K    +   FYP  D K R  S  K+    +R T   +TPGTV ILLAGR
Sbjct: 31  KNGGTFPKAGKPAAAAEPKFYPADDVKPRAPSTRKANPTKLRST---ITPGTVLILLAGR 87

Query: 416 HAGKRXXXXXXXXXXXXXFTGP 481
           + GKR              TGP
Sbjct: 88  YMGKRVVFLKQLKSGLLLITGP 109


>04_04_0211 -
           23636377-23636532,23636624-23636805,23637853-23637959,
           23637997-23638280
          Length = 242

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 31/127 (24%), Positives = 46/127 (36%), Gaps = 4/127 (3%)
 Frame = +2

Query: 113 LGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLLKSRK 292
           L  G+ + S+S  YH++ ++  +                       K      V  +   
Sbjct: 7   LSQGIKKASRSHTYHRRGLWA-IKAKHGGAFPKAEKPAAAAAAAAPKFYPADDVKPRQPS 65

Query: 293 SFYPTQDKIRGRSHGK----SFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXX 460
           +  P   K+R  S       S  + +   R ++TPGTV ILLAGR  GKR          
Sbjct: 66  TRKPNPTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQLKSG 125

Query: 461 XXXFTGP 481
               TGP
Sbjct: 126 LLLVTGP 132


>07_03_1327 + 25833927-25834391,25834943-25835340,25835395-25836331
          Length = 599

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 477 PVKSSRPLGNTPTSTTRLPACLPANRMHTVPGVRLGLVLRTCLL 346
           P  ++ P+ +TP+ T +   CLPA+R  T    R   +LR  L+
Sbjct: 258 PTWTTSPILSTPSHTWQRSLCLPASRSFTPRKSRRDQLLRLALV 301


>01_07_0229 + 42161770-42164562
          Length = 930

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +3

Query: 117 ETVYSVSPKAGCTTRRLYISLSVRRTRKLKS 209
           +T  + SPKA  T R+ Y+S S+R T  LKS
Sbjct: 890 DTSVASSPKAFFTKRQPYLSSSIRYTSFLKS 920


>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
          Length = 1821

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -1

Query: 477 PVKSSRPLGNTPTSTTRLPACLPANRMHTVPGVRLG 370
           P+KS+ P GN    TTRL +   A R+ TV  + LG
Sbjct: 440 PLKSNHPKGNMILVTTRLLSL--AQRIGTVKPIELG 473


>10_08_0974 + 21969713-21971914
          Length = 733

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 268 YSPAEKQEIILPHSGQDQGSFSWQEFQ*TCA*DET 372
           Y P+ K +++    G +QG+ SW EF  T   D+T
Sbjct: 364 YRPS-KSDVVGGEDGVEQGNTSWPEFVPTSGPDKT 397


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,186,501
Number of Sequences: 37544
Number of extensions: 290122
Number of successful extensions: 788
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)