Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_H12
         (483 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    37   3e-06
Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical pr...    30   0.77 
Z72507-1|CAA96633.2|  172|Caenorhabditis elegans Hypothetical pr...    28   3.1  
Z71177-5|CAA94871.2|  531|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical p...    27   9.4  
AC084153-1|AAK84596.1|  385|Caenorhabditis elegans Hypothetical ...    27   9.4  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 37.1 bits (82), Expect(2) = 3e-06
 Identities = 24/60 (40%), Positives = 28/60 (46%)
 Frame = +2

Query: 251 KNGGTRTVLLKSRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKR 430
           K G  +    K   +  P   +  G       SK V   R  LTPGTV I+LAGRH GKR
Sbjct: 31  KKGEKKPKFTKDTSAKLPKLQR-NGTKFALGHSKTVT-LRKTLTPGTVLIVLAGRHKGKR 88



 Score = 30.7 bits (66), Expect(2) = 3e-06
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +2

Query: 101 RNYDLGNGVLRFSKSRMYHKK 163
           RN+DL  GVLRFS SR+  KK
Sbjct: 12  RNFDLSPGVLRFSASRLRLKK 32


>Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical
           protein C54C8.12 protein.
          Length = 82

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = +2

Query: 296 FYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKR 430
           FYPT+   + RSHG   +       PN     V    A RHAG R
Sbjct: 26  FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70


>Z72507-1|CAA96633.2|  172|Caenorhabditis elegans Hypothetical
           protein F17C11.1 protein.
          Length = 172

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +3

Query: 360 VGRDLTSL--PAQCAFCWR-ADTLASVSCSLECC 452
           V R+ T+L   ++C F W  A T A+ +CS  CC
Sbjct: 74  VNRNCTALVPDSKCVFKWAFATTAAATACSCTCC 107


>Z71177-5|CAA94871.2|  531|Caenorhabditis elegans Hypothetical
           protein AC3.8 protein.
          Length = 531

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 217 FLGLFSFRVLLTDKLIYSLLVVHPAFGETEYTVSEVIIPRFAN 89
           FL +F F  L  + L Y+ LVV P FG +       +    AN
Sbjct: 4   FLLVFLFFALYCNVLAYNYLVVAPVFGYSHMKFMNKVADTLAN 46


>Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical
           protein Y49E10.29 protein.
          Length = 559

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
 Frame = +2

Query: 269 TVLLKSRKSFYP-------TQDKIRGRSHGKSFSKHVRRTRPNLTPGTV 394
           T   K RKSF P       TQ    G++ GK+  K      P L+P  +
Sbjct: 480 TTTKKPRKSFSPGSATPKHTQPSENGKASGKTVGKEKESNSPELSPNVI 528


>AC084153-1|AAK84596.1|  385|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.7 protein.
          Length = 385

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
 Frame = +2

Query: 254 NGGTRTVLLKSRKSFYPTQDKIRGRSHGKSFSKH-VRRTRPNLTPGTVCILLAGRHAG 424
           NG   ++    R       D I GR    S S   VRR  P   PG +   +   H G
Sbjct: 243 NGHVSSMTRHQRHLATSINDVINGRQVTSSMSSELVRRAMPRHPPGGIATSIVSEHRG 300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,391,222
Number of Sequences: 27780
Number of extensions: 233247
Number of successful extensions: 675
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)