Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_H11
         (373 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433...   151   2e-37
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995...   140   2e-34
04_04_1362 + 32897581-32897925,32897979-32897984                       30   0.50 
03_01_0427 + 3296717-3296861,3296966-3297210                           28   2.7  
12_01_0254 + 1885412-1885683,1886123-1886389,1886501-1887077           27   3.6  
11_01_0256 + 1969292-1969563,1970004-1970270,1970413-1970989           27   3.6  
08_02_0628 + 19459198-19459674,19459751-19459894,19460191-194604...    27   4.7  
01_01_0714 - 5539961-5540401                                           27   6.2  

>09_02_0105 -
           4337047-4337079,4337175-4337242,4337323-4337425,
           4337507-4337737,4339307-4339347,4339437-4339473,
           4339603-4339605
          Length = 171

 Score =  151 bits (366), Expect = 2e-37
 Identities = 75/113 (66%), Positives = 87/113 (76%), Gaps = 1/113 (0%)
 Frame = +3

Query: 33  MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPF 212
           M +YSRE +NP KS KA G +LRVHFKNT ETA AIRKLPL +A RYL++V   K+ IPF
Sbjct: 1   MVKYSREANNPTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPF 60

Query: 213 RRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRL 368
           RR+ GGVGR AQAK +    QGRWP KSA F+L LL+NAESNA+ KGLDVD L
Sbjct: 61  RRYCGGVGRTAQAKSRHSNGQGRWPAKSARFILDLLKNAESNAEVKGLDVDTL 113


>08_02_1361 -
           26398987-26399019,26399320-26399387,26399458-26399560,
           26399658-26399888,26400791-26400826,26400891-26400931,
           26401028-26401064,26401158-26401160
          Length = 183

 Score =  140 bits (340), Expect = 2e-34
 Identities = 75/125 (60%), Positives = 86/125 (68%), Gaps = 13/125 (10%)
 Frame = +3

Query: 33  MGRYSREPDNPAKSCKARGSNLRVHFK------------NTYETAMAIRKLPLRRAVRYL 176
           MG+YS EP NP KS KA G +LRVHFK            NT ETA A+RKLPL +A RYL
Sbjct: 1   MGKYSTEPSNPTKSAKAMGRDLRVHFKVIVFARFVQCCSNTRETAFALRKLPLVKAKRYL 60

Query: 177 KNVTEKKECIPFRRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRNAESNADYKGL 353
           ++V   K+ IPFRR+ GGVGR AQ K +    QGRWP KSA F+L LL+NAESNAD KGL
Sbjct: 61  EDVIAHKQAIPFRRYCGGVGRTAQVKSRQSNGQGRWPAKSARFILDLLKNAESNADVKGL 120

Query: 354 DVDRL 368
           DVD L
Sbjct: 121 DVDNL 125


>04_04_1362 + 32897581-32897925,32897979-32897984
          Length = 116

 Score = 30.3 bits (65), Expect = 0.50
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 319 LKSWSRNSADFLGQRPCVVPNCLACAQRPTPPLKRRKGMH 200
           L++W R SA  +  RP +     ACA+    P +R +G +
Sbjct: 14  LRAWIRRSATAVALRPLLTGVAAACAEAIASPARRGRGRY 53


>03_01_0427 + 3296717-3296861,3296966-3297210
          Length = 129

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 274 PCVVPNCLACAQRPTPPLKRRKGM 203
           PCV+PNC A A R  P L  +  M
Sbjct: 92  PCVIPNCKASAARLCPLLLSQSHM 115


>12_01_0254 + 1885412-1885683,1886123-1886389,1886501-1887077
          Length = 371

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 86  WLKPSCSLQEHL*NCHGYKKTASSPCCPLP 175
           W++ SCS+ E L +C G K T     C  P
Sbjct: 81  WVEHSCSVPELLDSCRGSKDTKREQECGRP 110


>11_01_0256 + 1969292-1969563,1970004-1970270,1970413-1970989
          Length = 371

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 86  WLKPSCSLQEHL*NCHGYKKTASSPCCPLP 175
           W++ SCS+ E L +C G K T     C  P
Sbjct: 81  WVEHSCSVPELLDSCRGSKDTKREQECGRP 110


>08_02_0628 +
           19459198-19459674,19459751-19459894,19460191-19460431,
           19460616-19461116,19461226-19461635
          Length = 590

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 161 CCPLPKECDRKEGMHSLPSF*RWSWPLCT 247
           CCP P +     G HS  S   +SWP  T
Sbjct: 32  CCPSPLQPIASGGQHSESSAAYFSWPTST 60


>01_01_0714 - 5539961-5540401
          Length = 146

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 129 AMAIRKLPL-RRAVRYLKNVTEKKECIPFRRFNGGVGRCAQ 248
           A+   K+P  +R   Y +N   +K   P+RR    + RCA+
Sbjct: 103 ALDANKVPCNKRGQSYYQNCASQKAANPYRRGCSAITRCAR 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,368,293
Number of Sequences: 37544
Number of extensions: 242149
Number of successful extensions: 588
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)